Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0342 ATGGGGAAACCAAGAAGAGAAGATGTTCTTTGTTTTGTGCTTTTTTTCTGGTTTTGTAGCTTTTCCAATGCCTTGCTTTCTCCAAAGGGTGTGAACTTTGAAGTGCTAGCTTTAATGGGCATAAAAGCTTCTCTTGTGGATCCTCATGGTATTCTAGATAATTGGGATGAGGATGCAGTTGATCCATGCAGCTGGAACATGGTCACATGTTCCCCTGAGAATCTTGTTATTAGCCTGGGCATTCCCAGTCAAAATTTGTCTGGCACACTATCTCCAAGCATTGGAAACCTAACAAATCTTCAGACTGTGGTGCTACAGAATAACAACATAACTGGACCAATCCCTTCAGAGATAGGAAAACTTTCCAAGCTCCAAACTCTTGATCTCTCTGATAACTTCTTCAGCGGGGAAATTCCCCCCTCTATGGGTCACCTGAGAAGCCTCCAATACTTAAGGCTTAATAATAACAGTTTTGATGGACAATGCCCAGAGTCACTAGCTAACATGGCACAGCTTGCTTTCCTTGACTTGTCCTACAACAATTTGAGTGGCCCTATACCTAAAATGTTGGCCAAATCATTCAGTATTGTAGGAAACCCCCTCGTTTGCGCTACAGAAAAAGAAAAAAATTGCCATGGGATGACACTTATGCCTATGTCAATGAACTTGAACGATACTGAGCATGCTTTGCCATCAGGCAGAAAAAAGGCTCACAAAATGGCCATAGCCTTTGGTTTAATTTTGGGATGCCTCAGCTTGATAGTTCTTGGTGTTGGACTTGTTTTATGGAGGAGGCACAAGCATAAACAACAGGCATTCTTTGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCATTTAAGAGAACTTCAGATTGCTACTAACAACTTCAGCAACAAAAACATTCTTGGAAAGGGTGGTTTTGGAAATGTCTACAAAGGAATTCTCCCAGATGGCACTCTAGTAGCAGTCAAGAGGCTTAAAGATGGCAATGCCATTGGAGGAGATATACAATTTCAGACTGAAGTTGAAATGATCAGCTTGGCAGTGCACAGAAACCTCCTCAAACTGTATGGATTTTGCATGACACCAACCGAAAGGCTTTTGGTTTATCCTTACATGTCCAATGGCAGTGTTGCTTCTAGGCTCAAGGGTAAGCCAGTGTTGGACTGGGGCACAAGGAAGCAAATTGCCTTAGGAGCAGCAAGGGGACTACTATACCTTCATGAGCAGTGTGATCCAAAGATAATCCATAGAGATGTGAAGGCTGCAAACATATTGCTTGATGACTATTGTGAGGCAGTGGTAGGAGATTTTGGATTGGCAAAGCTTTTAGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGCACAGTGGGGCATATTGCACCAGAGTACCTTTCCACAGGGCAATCTTCTGAAAAGACTGATGTATTTGGATTTGGTATACTGCTTCTTGAATTGATCACTGGCCAAAGGGCTCTAGAATTTGGAAAAGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGTAAGGAAACTACATCAAGAGAAGAAGCTTGAGTTGCTTGTTGACAAGGATCTCAAGACTAACTATGACAGAATTGAGCTTGAGGAAATAGTTCAAGTGGCACTCTTGTGCACACAGTATCTTCCGGGCCACAGGCCCAAAATGTCCGAAGTTGTACGCATGCTTGAAGGTGATGGGCTTGCAGAGAAATGGGAAGCCTCACAAAGTGCTGACACTACCAAGTGCAAACCACAAGAACTCTCTTCATCAGATAGGTATTCTGACCTCACTGATGACTCTTCTTTGTTAGTCCAAGCCATGGAACTCTCAGGCCCTAGGTGA 1875 0.4325 MGKPRREDVLCFVLFFWFCSFSNALLSPKGVNFEVLALMGIKASLVDPHGILDNWDEDAVDPCSWNMVTCSPENLVISLGIPSQNLSGTLSPSIGNLTNLQTVVLQNNNITGPIPSEIGKLSKLQTLDLSDNFFSGEIPPSMGHLRSLQYLRLNNNSFDGQCPESLANMAQLAFLDLSYNNLSGPIPKMLAKSFSIVGNPLVCATEKEKNCHGMTLMPMSMNLNDTEHALPSGRKKAHKMAIAFGLILGCLSLIVLGVGLVLWRRHKHKQQAFFDVKDRHHEEVYLGNLKRFHLRELQIATNNFSNKNILGKGGFGNVYKGILPDGTLVAVKRLKDGNAIGGDIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVRKLHQEKKLELLVDKDLKTNYDRIELEEIVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQSADTTKCKPQELSSSDRYSDLTDDSSLLVQAMELSGPR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0342 624 CDD TM_EGFR-like 240 270 - -
Gso19g0342 624 MobiDBLite consensus disorder prediction 584 610 - -
Gso19g0342 624 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 5 624 - -
Gso19g0342 624 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Gso19g0342 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 624 - -
Gso19g0342 624 Pfam Leucine Rich repeats (2 copies) 98 138 IPR025875 -
Gso19g0342 624 Gene3D Transferase(Phosphotransferase) domain 1 381 593 - -
Gso19g0342 624 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Gso19g0342 624 Pfam Protein kinase domain 305 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0342 624 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Gso19g0342 624 SUPERFAMILY L domain-like 34 306 - -
Gso19g0342 624 SMART serkin_6 304 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0342 624 SUPERFAMILY Protein kinase-like (PK-like) 281 574 IPR011009 -
Gso19g0342 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Gso19g0342 624 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Gso19g0342 624 ProSiteProfiles Protein kinase domain profile. 304 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0342 Gso-Chr19 5605297 5609731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0342 10 624 Receptor kinase-like Gene Family AT5G16000 78.010 0.0 990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gso19g0342 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0342 - - gmx:100806650 1229.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0325 13 14611856 14616272 Gso19g0342 19 5605297 5609731 GST
Gso19g0342 19 5605297 5609731 Gso18g2279 18 55681273 55685368 PCT
Gso19g0342 19 5605297 5609731 Gso8g2101 8 22751683 22755820 PCT
Gso18g2279 18 55681273 55685368 Gso19g0342 19 5605297 5609731 PCT
Gso8g2101 8 22751683 22755820 Gso19g0342 19 5605297 5609731 PCT