Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0341 ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCAACACTGGCACCACCTGGTCACGTGTCTGTGACACGTGCCTGTCTGCGCCATGCGTGCTGTACTGCCATGCAGACTCAGCATATCTTTGCTCTTCCTGTGATGCTCGTGTGCATGCAGCTAACCGTGTGGCCTCGAGACACAAGCGTGTGTGGGTGTGCGAAGCGTGTGAGCGTGCTCCGGCGGCGTTTCTATGCAAAGCTGACGCAGCTTCTCTTTGTTCTTCCTGTGATGCTGACATTCACTCAGCAAACCCTCTCGCTAGCCGCCACAACCGTGTTCCCATTCTCCCGATCTCAGGTTCCCTCTTCAGGGAACCAGAGCACAATCACAAACGCGTGGAACACGCGTTCGTGAATGAGGTTGAGGAGGAAGAGGAAGGGGTTTTTGATGAGTATGAAGACGAGGTTGAAGCTGCTTCGTGGTTGTTGCCACATCCTATGAAAAATAATGATGAAATTGAGGAGAATGATTGTGGTGACGAGGGTTTTTTGTTTGTTGATGAGTATTTGGACAATCTTGTTGATTGTTGTAACTCATGTGGTCACAATGACAACCAGTTTAGCAACGTTTATCAGCACCAGCAGAATTACAACACTGTCCCTCAGAACTATGTAGTGGTTCCAGTTCAGGTGCCGCAGCATTTTCAACCCGGTTTGGACTTTGACTCATCAAAAGCTGGGTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTTTCGGTTTCATCAATGGATGTTGGAGTTGTACCCGAATCAACAGTAAGTGGCATCTCAATGTCCCACTCAAAGTCACCAATAGGGACAAATGACCTATTTCCTCCCCTTCTCATGCCTTCACATCTCACACCAATGGACAGAGAGGCAAGAGTCCTAAGATATAGGGAGAAAAAGAAGACAAGAAAGTTCGAGAAGAAAATAAGATATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGCATAAAGGGTCGTTTTGCAAAGAGAACTGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCACAAAACTATTCAATGAAGTTGGAGGTAGCATTTTTCCCACTTTCTAG 1101 0.4723 MLKEGTNNVGGSNTGTTWSRVCDTCLSAPCVLYCHADSAYLCSSCDARVHAANRVASRHKRVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHNRVPILPISGSLFREPEHNHKRVEHAFVNEVEEEEEGVFDEYEDEVEAASWLLPHPMKNNDEIEENDCGDEGFLFVDEYLDNLVDCCNSCGHNDNQFSNVYQHQQNYNTVPQNYVVVPVQVPQHFQPGLDFDSSKAGFSYDGSLSQSVSVSSMDVGVVPESTVSGISMSHSKSPIGTNDLFPPLLMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTKLFNEVGGSIFPTF* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0341 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 17 366 IPR045281 GO:0009909
Gso19g0341 366 SMART bboxneu5 65 107 IPR000315 GO:0008270
Gso19g0341 366 SMART bboxneu5 17 64 IPR000315 GO:0008270
Gso19g0341 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 17 366 - -
Gso19g0341 366 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Gso19g0341 366 Pfam CCT motif 297 339 IPR010402 GO:0005515
Gso19g0341 366 CDD Bbox1_BBX-like 21 64 - -
Gso19g0341 366 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Gso19g0341 366 CDD Bbox1_BBX-like 64 107 - -
Gso19g0341 366 ProSiteProfiles CCT domain profile. 297 339 IPR010402 GO:0005515
Gso19g0341 366 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0341 Gso-Chr19 5537313 5539642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0341 1 366 C2C2-CO-like Transcription Factor Family AT3G02380 53.141 9.21e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso19g0341 zf-B_box 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0341 - - gmx:100805051 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0327 13 14633759 14636001 Gso19g0341 19 5537313 5539642 GST
Gso19g0341 19 5537313 5539642 Gso18g2278 18 55665227 55667887 PCT
Gso19g0341 19 5537313 5539642 Gso8g2100 8 22701621 22704271 PCT
Gso18g2278 18 55665227 55667887 Gso19g0341 19 5537313 5539642 PCT
Gso8g2100 8 22701621 22704271 Gso19g0341 19 5537313 5539642 PCT