Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0338 ATGTCAATGCCCTTGCTCACAAACTTGCAACACATTGAGACACTCCTCAATGCACCAAACCCCACCGTTAGTGCATCCATTAAAAGATGGCACTCTGCATTCATGGCCATCTATTGTTCCCGAGCTATTATGTCACACTCCACTCTCAAGAAACCAAACAAAACCAAAGCAAAAGCCTCACCTTCACCAACACCAACACCAACACCATCTTTCACAGTTGTTGATTTGAACCCTCACCATTCCTTTGATATAGACCAAACAGCCCTCACCGATATTGTCAAAGAAAAAGAGCTTGAGAACCTTGATAGATTTGGTGGGGTTGAAGGGGTGGCTAAAGCCCTTCAAACCCACGTTGAGTATGGTATCAAAGGTGGTGATGATGATGCTGAAGACATCACACGTAGAAGACAAGTGTTTGGTTCCAACACTTACCACAAACCACCTTCCAAAGGCTTCTTTCACTTTGTGGTGGAAGCCTTTAAGGATGTCACTATTCTAATCCTCATGGTTTGTGCTGCTCTTTCCCTTGGCTTTGGAATCAAGGAGCATGGAATTAAAGAAGGTTGGTACGATGGTGGAAGCATCTTTGTCGCGGTGTTCATTGTTATTTCCTTGTCAGCAGTGAGCAACTTCAGACAGAATAGACAGTTTGACAAGCTGTCTCAAGTGAGCAATGACATACAAATTGATGTGGTTAGAAGTGGGAGGCGCCAAAATGTTTCAATCTTCGAAATCGTAGTTGGCGATGTTATTTGCTTGAAGATTGGAGATCAAGTGCCAGCAGATGGGTTGTTCATAGAAGGACATTCACTTAAAGTCGATGAAGCAAGCATGACAGGAGAGAGTGATCATGTTGAGATTAGTAGACAAAACCACCCTTTTCTGTTCTCAGGTACCAAAGTGGCTGATGGATATGCTAAGATGCTTGTTACTTCAGTTGGAATGAACACAACATGGGGCCAAATGATGAGTTCAATAAGCCAAGATATTGATGAGGAAACTCCTTTGCAAGAGAGATTAAACAAGCTGACATCATCCATTGGGAAGGTTGGTTTGGCTGTGGCTTTTCTTGTCCTTGTTGTTTTGTTGGTTAGGTACTTCACAGGTAACACAAAGGATGAGACTGGGATCAAAGAGTTCAATGGAAGCAGGACCAAGTTTGATGATATCATGAATGCTGTTGTGGGGATTGTTGCTGATGCAGTTACAATTGTTGTTGTTGCAATCCCTGAGGGTCTTCCTCTGGCTGTGACTCTAACTCTGGCTTATTCAATGAAGAAAATGATGGCTGACCAAGCAATGGTGAGAAAGCTCTCTGCATGTGAGACAATGGGTTCTGCTACCACAATTTGTACTGATAAGACAGGAACTCTCACACTTAACGAGATGAAGGTGACTAAGGTTTGGCTTGGCCTAGAACCGGTGCTAGAAAGTGCCTACACAAAGGTTGCTCCATTTGTTCTTCAATTGATCCAAGAAGGAGTGGCTCTAAACACTACTGGAAGTGTGCACAAGTCCAATAAATCAGGTTCTGAATTTGAGTTTTCAGGTAGTCCCACAGAGAAAGCAATCCTATCTTGGGCTGTCTTGGAATTGAACATGGAGATGGAGAACTTGACAAGAAGTTGTTCCATCATTCATGTTGAGACCTTCAACTCAAAGAAGAAAAGAAGTGGAGTTTTGTTGAGAAGGAAGGTAGACAACACAGTTAATGCACATTGGAAAGGAGCAGCTGAGATGGTACTAAAGATGTGTTCAAGATACTATGATGCTTCTGGCATTGTGAAAGATCTTGACAATGATAGGATGTTGAAGTTTGAGCACATTATTCAAGGTATGGCTTCTAGTAGTCTTCGTTGCATTGCTTTTGCACATGTAGAAGTAGCTGAGGAGGAGCTTGTAGATGAAGAAGGGAATGCAATGGCGAAAGTGAAAGAAAATGGTTTAACATTGTTGGGGCTTGTGGGTATTAAGGATCCATGTCGTCAAGGGGTGAAGAATGCCGTGGAAGCATGCCAAAATGCTGGTGTGAATATCAAAATGATCACAGGTGACAATGTTTTCACTGCAAAGGCCATAGCAACCGAATGCGGCATACTTCGGCCTAATCAAGACACAGATGGAGCAGTGATTGAAGGAGAGGAATTCCGCAACTACACGCATGAAGAGAGGTTGGAGAAGGTGGAAAAAATCTGTGTGATGGCAAGATCTTCTCCTTTTGACAAACTTCTAATGGTTCAATGCCTAAAACAAAAAGGCCATGTAGTTGCTGTCACTGGGGATGGAACAAACGATGCACCGGCTCTCAAAGAAGCTGATATTGGACTCTCTATGGGAATTCAAGGTACTGAAGTGGCGAAAGAGAGCTCAGATATTGTTATATTGGATGACAATTTTGCATCTGTGGTCACTGTCTTAAGGTGGGGAAGGTGTGTTTACAACAACATCCAGAAGTTCATTCAGTTTCAATTGACAGTGAATGTGGCAGCACTTGCAATCAACTTTGTGGCAGCAGTGTCAGCTGGGAAAGTGCCACTAACAGCAGTGCAATTATTATGGGTGAACTTGATCATGGACACATTAGGTGCTTTGGCTCTTGCAACAGAAAAACCTACAATGGAATTGATGCACAAACCACCAGTGGGTAGAACAAAACCTCTCATCACCAATGTCATGTGGAGGAACCTATTGGCTCAAGCTTTGTACCAAATAGCAATTTTGCTGACCCTTCAATTTAAAGGTGAGTCTATCTTTGGTGTGACATCAGGAGTAAATGACACATTGATTTTCAACACATTTGTTCTTTGTCAAGTGTTCAATGAATTCAATGCAAGGAAGATGGAGAAGAGGAATGTCTTCAAAGGCATACACAGGAGCAAGTTGTTTTTAGGCATTATTGGCATAACAATAATCCTTCAGGTGGTGATGGTTGAGTTTCTCAAGAAATTTGCTGACACAGAGAGGCTAAATTGGGGACAATGGGGTATCTGCATTGGTTTAGCCGCAGTTTCCTGGCCAATTGGTTGGGTTGTGAAGTTAATACCTGTCCCAGATAAACCATTCCTCAGTTTTTTGAGTAAGAAGAAATGA 3090 0.4246 MSMPLLTNLQHIETLLNAPNPTVSASIKRWHSAFMAIYCSRAIMSHSTLKKPNKTKAKASPSPTPTPTPSFTVVDLNPHHSFDIDQTALTDIVKEKELENLDRFGGVEGVAKALQTHVEYGIKGGDDDAEDITRRRQVFGSNTYHKPPSKGFFHFVVEAFKDVTILILMVCAALSLGFGIKEHGIKEGWYDGGSIFVAVFIVISLSAVSNFRQNRQFDKLSQVSNDIQIDVVRSGRRQNVSIFEIVVGDVICLKIGDQVPADGLFIEGHSLKVDEASMTGESDHVEISRQNHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISQDIDEETPLQERLNKLTSSIGKVGLAVAFLVLVVLLVRYFTGNTKDETGIKEFNGSRTKFDDIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKVWLGLEPVLESAYTKVAPFVLQLIQEGVALNTTGSVHKSNKSGSEFEFSGSPTEKAILSWAVLELNMEMENLTRSCSIIHVETFNSKKKRSGVLLRRKVDNTVNAHWKGAAEMVLKMCSRYYDASGIVKDLDNDRMLKFEHIIQGMASSSLRCIAFAHVEVAEEELVDEEGNAMAKVKENGLTLLGLVGIKDPCRQGVKNAVEACQNAGVNIKMITGDNVFTAKAIATECGILRPNQDTDGAVIEGEEFRNYTHEERLEKVEKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGKVPLTAVQLLWVNLIMDTLGALALATEKPTMELMHKPPVGRTKPLITNVMWRNLLAQALYQIAILLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKRNVFKGIHRSKLFLGIIGITIILQVVMVEFLKKFADTERLNWGQWGICIGLAAVSWPIGWVVKLIPVPDKPFLSFLSKKK* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0338 1029 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 81 1016 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gso19g0338 1029 CDD P-type_ATPase_Ca_PMCA-like 132 892 - -
Gso19g0338 1029 MobiDBLite consensus disorder prediction 49 68 - -
Gso19g0338 1029 PRINTS P-type cation-transporting ATPase superfamily signature 274 288 - -
Gso19g0338 1029 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Gso19g0338 1029 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Gso19g0338 1029 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Gso19g0338 1029 PRINTS P-type cation-transporting ATPase superfamily signature 759 778 - -
Gso19g0338 1029 PRINTS P-type cation-transporting ATPase superfamily signature 783 795 - -
Gso19g0338 1029 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 657 IPR023299 GO:0000166
Gso19g0338 1029 SFLD C1.7: P-type atpase like 433 812 - -
Gso19g0338 1029 PRINTS H+-transporting ATPase (proton pump) signature 606 624 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g0338 1029 PRINTS H+-transporting ATPase (proton pump) signature 759 775 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g0338 1029 PRINTS H+-transporting ATPase (proton pump) signature 791 816 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g0338 1029 Gene3D - 448 804 IPR023214 -
Gso19g0338 1029 SUPERFAMILY HAD-like 449 864 IPR036412 -
Gso19g0338 1029 Gene3D - 461 660 IPR023299 GO:0000166
Gso19g0338 1029 SUPERFAMILY Calcium ATPase, transduction domain A 228 325 IPR008250 -
Gso19g0338 1029 Pfam E1-E2 ATPase 228 429 - -
Gso19g0338 1029 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Gso19g0338 1029 Pfam Cation transporter/ATPase, N-terminus 105 175 IPR004014 -
Gso19g0338 1029 Pfam haloacid dehalogenase-like hydrolase 448 773 - -
Gso19g0338 1029 SMART Cation_ATPase_N_a_2 103 180 IPR004014 -
Gso19g0338 1029 Gene3D - 158 1013 - -
Gso19g0338 1029 SFLD p-type atpase 433 812 IPR044492 -
Gso19g0338 1029 PANTHER CATION TRANSPORTING ATPASE 20 1003 - -
Gso19g0338 1029 Pfam Cation transporting ATPase, C-terminus 844 1014 IPR006068 -
Gso19g0338 1029 PANTHER CALCIUM-TRANSPORTING ATPASE 20 1003 - -
Gso19g0338 1029 SUPERFAMILY Calcium ATPase, transmembrane domain M 105 1016 IPR023298 -
Gso19g0338 1029 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 394 473 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g0338 1029 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 731 840 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g0338 1029 Gene3D - 130 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0338 Gso-Chr19 5463410 5467175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0338 12 1029 Primary Pumps ATPases AT3G22910 68.328 0.0 1336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0338 K01537 - gmx:100793918 1934.84