Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0336 ATGAGGAAACCTGATATGATGGGAAAAGACAAAATCAACAACAACATTAAGAGCAAGCTAAGGAAGGGTTTGTGGTCACCTGAGGAAGATGAGAAGCTCCTAAGGTATATGATCACTAAGGGACAAGGGTGTTGGAGTGACATTGCTAGGAATGCTGGTCTTCAAAGGTGCGGCAAAAGTTGCCGTCTTCGTTGGATTAACTACTTGAGACCTGATCTCAAACGTGGTGCATTTTCACCTCAAGAGGAAGAAGTCATCATTCACTTGCACTCCATTCTTGGCAACAGATGGTCTCAAATTGCCGCACGTCTCCCTGGTCGCACAGACAATGAGATCAAGAATTTCTGGAACTCCACACTGAAGAAAAGGTTGAAAATGAACAACAATAACTCCACTTTATCACCAAACAATAGTGACTCATCAGGGCCTAAAGATGTCAATGTCATGGGTGGAATCATGTCCATGAACGAGCATGACCTCATGACCATGTGCATGGACTCCTCCTCATCAACATCATCATCATCATGCATGCAATCCATGCATGCCACCAACATGGTACTAACTAACCCCTTTCCCTTGTTGCCCAACAACCGTTATGACATGATGACCGGTGCAACCGGTTTCCTTGACAACATGGCTGCTGCATGCTTAACCCAAGTTGGCATGGTAGATCATGATCATGGGGTTGTTCATGGGACATTGGAGCCTAATAAAACGCGTTTAGGAAGCGACTTTTCCCTTCCTCCACTAGAAAGTAGAAGCATTGAGGACAATAGTAGTACCCCAATTGATCATGTGAAAAGCCATAACAACAACAACCACTTCAAGAATAGTTGCTTCAATAACACTGATCATTACCATCATATTCAAAGCTCCAACAACGTAGTTGTAGAGGATTTGTTTGGGTTTGGAAATCATGGGCAAGGGGAAAACTTTAGAATGGGAGAATGGGACCTTGAGGGCTTGATGCAAGACATTTCCTATTTTCCTTCCCTTGATTTCCAAGTTTAA 1011 0.4342 MRKPDMMGKDKINNNIKSKLRKGLWSPEEDEKLLRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEVIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKMNNNNSTLSPNNSDSSGPKDVNVMGGIMSMNEHDLMTMCMDSSSSTSSSSCMQSMHATNMVLTNPFPLLPNNRYDMMTGATGFLDNMAAACLTQVGMVDHDHGVVHGTLEPNKTRLGSDFSLPPLESRSIEDNSSTPIDHVKSHNNNNHFKNSCFNNTDHYHHIQSSNNVVVEDLFGFGNHGQGENFRMGEWDLEGLMQDISYFPSLDFQV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0336 336 CDD SANT 77 120 IPR001005 -
Gso19g0336 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Gso19g0336 336 CDD SANT 25 69 IPR001005 -
Gso19g0336 336 SMART sant 21 71 IPR001005 -
Gso19g0336 336 SMART sant 74 122 IPR001005 -
Gso19g0336 336 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Gso19g0336 336 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Gso19g0336 336 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Gso19g0336 336 PANTHER MYB DOMAIN PROTEIN 55 1 336 - -
Gso19g0336 336 Gene3D - 22 74 - -
Gso19g0336 336 Gene3D - 76 147 - -
Gso19g0336 336 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Gso19g0336 336 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Gso19g0336 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Gso19g0336 336 PANTHER TRANSCRIPTION FACTOR MYB83 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0336 Gso-Chr19 5416272 5420284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0336 1 336 MYB Transcription Factor Family AT3G08500 47.934 1.84e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g0336 Myb_DNA-binding 5.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0336 K09422 - gmx:100796379 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0328 13 14660447 14664340 Gso19g0336 19 5416272 5420284 GST