Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0334 ATGCAAAGCAGGGAAGTAGTCTCAGGCCTCAATTATTTACTCCCTTCAAACCCTTGTCCCTACCCTCCTAACAACAACAACTACACCACCATGTTCCAAAACAACATTAATCCCACATTTCAGTTCCAAAGATTCTCTAACCAAATATATGGCTATAACAATATTAACAACACTCCCTATCATAAAGTTCCCGACTTATTCAGTCCTCAATCCTCATGTATAAGCAGCAACTCCACTTCTGATGAGGCTGATGAGCAAAACCTGAGCCTCATCAACGAGAGGAAGCACAGGAGAATGATATCGAACCGCGAATCGGCGCGAAGATCACGCATGAGGAAGCAGAAGCACCTTGATGAGCTCTGGTCACAAGTGGTGTGGCTCAGGAATGAGAACCACCAGCTCATGGACAAGCTGAACCATGTCTCAGAGAGCCATGACCAAGTGATGCAAGAGAATGCTCAACTCAAAGAACAAGCTTTGGAACTTCGCCAAATGATTAGGGACATGCAGATACATAGCCCTTGCCCCTCCTCCTTCATAACCCCTTTGGAAGATCATCATCATGATGTTGATCATGTGATTCCTTCAGCATATCTCAGATCTGATTCTTCAAACCAATTATCCAACTCGTGTAACAACAACATGGACGACCTCCTTGGCTGA 663 0.4465 MQSREVVSGLNYLLPSNPCPYPPNNNNYTTMFQNNINPTFQFQRFSNQIYGYNNINNTPYHKVPDLFSPQSSCISSNSTSDEADEQNLSLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLMDKLNHVSESHDQVMQENAQLKEQALELRQMIRDMQIHSPCPSSFITPLEDHHHDVDHVIPSAYLRSDSSNQLSNSCNNNMDDLLG* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0334 220 Coils Coil 138 172 - -
Gso19g0334 220 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 92 155 IPR004827 GO:0003700|GO:0006355
Gso19g0334 220 CDD bZIP_plant_GBF1 95 146 IPR045314 GO:0003700|GO:0006355
Gso19g0334 220 Pfam bZIP transcription factor 94 152 IPR004827 GO:0003700|GO:0006355
Gso19g0334 220 Gene3D - 92 149 - -
Gso19g0334 220 SMART brlzneu 90 154 IPR004827 GO:0003700|GO:0006355
Gso19g0334 220 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 206 IPR044521 -
Gso19g0334 220 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 97 112 IPR004827 GO:0003700|GO:0006355
Gso19g0334 220 PANTHER BZIP TRANSCRIPTION FACTOR 1 206 - -
Gso19g0334 220 SUPERFAMILY Leucine zipper domain 94 144 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0334 Gso-Chr19 5382727 5383760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0334 19 184 bZIP Transcription Factor Family AT3G30530 57.310 1.63e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso19g0334 bZIP_1 4.2e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0334 - - gmx:100791105 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0331 13 14704089 14705071 Gso19g0334 19 5382727 5383760 GST
Gso19g0334 19 5382727 5383760 Gso18g2273 18 55617526 55618480 PCT
Gso19g0334 19 5382727 5383760 Gso8g2094 8 22596510 22597415 PCT
Gso18g2273 18 55617526 55618480 Gso19g0334 19 5382727 5383760 PCT
Gso8g2094 8 22596510 22597415 Gso19g0334 19 5382727 5383760 PCT