Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0333 ATGTCTAATCATCATCATTCCTCCAATCCCTTCGCATCATCCTCATCCACTCACTCCGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAAACTCGCCTCTGCTCCTGCGACGACGACACTGACATAAACCCCTTTTCCGACGTCGTTTGCGACCTCCACCGTACGGAGCATGTGTTAGGGTTAGGGTTTGGCGTTGAAATTGATCCCCATAGCCAAACGAATGGGGATAATCATCATCGTGATCGGGTTTTCGATGCTGATAGAGTTTTCAATTTCACGGTGGGGGATGGTTCGAGCGGGGTTAGGGTTGTAGGGTTTGGTTTGGATTCCGAATCGAGTAGCGAGGAGGGTGGGATTCGCGATGGCGGTGGGTTTGAGGATTTCGATGCTCGATTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACGCTGAATGAGGGGTTTGAATGGGAGGAGGTGGAGGAGAGGGTGAACGAGAGAGAGGATTTGGGTTTGGTGGTTGATGAGGTTGAGATTGAAATTGAAGGTGATGATGGCGATGGGAATTCGGTGGCGTCAGGGTTCACTAATGCCGTTGAGGAGGAAGAAGAGGAGGAGGAGGAGGATGCCGGGGAAGAGGCGCTGAGGTACCTCGAATGGGAGATTCTCTTGGCGGTTAACAATTCGGAGAGGAATGTGAATGGTGTGTTGGAGCACGAGGGCAATGCTGTTGGTGGTGCTGATTTCTTAACAATTCAGGATGGTTATGTGTATGCCGCAGAGTATGATGTTTTGTTCGGGCAGTTTCTTGAGAATGAGAGTGCCTTGAAGGGAAGCCCTCCGGCTGCGAAGAGTGTTGTGGAGAGTCTCCCGTTGGTGGAGTTGTCGAAGGAGGAGTTGTTGCAGGGGAAGAACGTGGCGTGCGCCATTTGCAAAGATGAGATTTTGTTGGAGGAGAAGGTCCGGAGGTTGCCTTGCTCGCATTGTTATCACGGGGACTGCATTTTTCCGTGGTTGGGCATTCGCAACACGTGCCCGGTTTGTCGGTTTGAGCTGCCCACAGATGATCCGGACTATGAGCAGGGGAAGGTCAATAGGGCTGCTCGTGGTCTGTTGGAGCTTGCGGCAGCACGGATGCAATTTTGA 1143 0.5197 MSNHHHSSNPFASSSSTHSDSDSDSVSCFVTDLFETRLCSCDDDTDINPFSDVVCDLHRTEHVLGLGFGVEIDPHSQTNGDNHHRDRVFDADRVFNFTVGDGSSGVRVVGFGLDSESSSEEGGIRDGGGFEDFDARLCWDSLCLEDQRTLNEGFEWEEVEERVNEREDLGLVVDEVEIEIEGDDGDGNSVASGFTNAVEEEEEEEEEDAGEEALRYLEWEILLAVNNSERNVNGVLEHEGNAVGGADFLTIQDGYVYAAEYDVLFGQFLENESALKGSPPAAKSVVESLPLVELSKEELLQGKNVACAICKDEILLEEKVRRLPCSHCYHGDCIFPWLGIRNTCPVCRFELPTDDPDYEQGKVNRAARGLLELAAARMQF* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0333 380 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 380 - -
Gso19g0333 380 SMART ring_2 307 347 IPR001841 -
Gso19g0333 380 Pfam Ring finger domain 307 348 IPR001841 -
Gso19g0333 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 354 IPR013083 -
Gso19g0333 380 SUPERFAMILY RING/U-box 294 356 - -
Gso19g0333 380 MobiDBLite consensus disorder prediction 182 209 - -
Gso19g0333 380 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 3 380 - -
Gso19g0333 380 MobiDBLite consensus disorder prediction 1 23 - -
Gso19g0333 380 ProSiteProfiles Zinc finger RING-type profile. 307 348 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0333 Gso-Chr19 5344967 5346688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0333 219 370 C3H Transcription Factor Family AT3G02340 51.205 9.58e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0333 - - gmx:100789524 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0332 13 14718936 14724283 Gso19g0333 19 5344967 5346688 GST