Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0331 ATGACAATTGGAAGTATTGAGCATAAGGCAAAGAAGACAAAATCAAGGAAGAACAAAGTAGTTGTTGATGAGAAGACACCTTTGATACCGAAGACTCATGATGCTGATGCTGAAGGCTTAGATGAATTCAATGGTGCTTCATTTTCTGGGGCAGTTTTCAACTTATCCACCACAGCTATTGGTGCTGGGATCATGGGGTTACCAGCATGTGTGAAAAAGTTGGGAATGGTTCCTGGTCTTCTTGCTATAATCTTAACTGCTTTGTTGACAGAGAAGTCAATTGGGTTCATGATCAGGAATTCCCGTGCAGGGAATCTTTCTTCTTATGGGAATCTCGTGGGGGATTCATTTGGCAAATTCGGAAAAGCTCTTGTGCAGATATGTGTTATAATCAACAACATTGGAATGCTTATTATTTACATGATTATTATTGGTGACGTGATTTCTGGAACATCTTCTAGTGAAATTCATCATTCTGGTGTACTTGAAGGATGGTTTGGAGTTCACTGGTGGACAGGACGTACATTTGTTCTTCTTTTTACAACATTTGCTGTGTTTGCACCTTTGTCTTGCTTCAAGCGAATTGATTCGTTGAGATACACTTCTGCATTATCATTTGGCTTAGCAGTTGCTTTTCTTGTTATTGCTGTGGGAATCTCAATTTTCAAGATTGCAATTGGAGGCATTGGGATGCCCAGACTCTTCCCGATCATTACTGATGTGGCCTCAGTTTTTGAACTGTTTACTGTAACTCCTGTGGTTGTGACAGCCTATCTGTGCCACTTCAATGTTCACAGCATAGATAATGAACTGGAGGACTCCTCACAGATACACGGGATTGTGCGTACTTCCCTTACTCTATGTGCTTCAGTGTACTTACTGACAAGCTTCTTTGGCTTCCTCCTATTTGGTGAAGGAACTCTTGATGATGTGCTTGCCAATTTTGATTCTGATCTGGGAATCCCTTTTGGTTCTGTGCTCAATGACGCTGTCCGTTTTAGCTATGCTGCGCATCTTGTGCTTGTATTTCCAGTTGTCTTCTATGCAGTGCGGATCAACCTTGATGGTCTCATATTTCCATCATCTAGGCCTTTGGTTCTAGATAACTTCAGATTTGCATCAATTACTATGGCCCTTATTGTTGCTTCCTTTTTGGGAGCAAATTTCATACCCAGCATTTGGGATATTTTCCAGTTCACTGGAGCAACAGCTGCTGCAAGTTTATCATTCATATTTCCATCTGCCATCACCCTAAGGGATCGGTACAACATCGGAACTAAAAAAGACAAGATTCTATCAGTCTTTATGATAGTCCTCGCAGTCTTCGCGAATGTTGTGGCTGTATACAGTGATGCCTTTGCCCTGATCAAGAATAGTACAACTAAACGTGAGTGA 1395 0.4129 MTIGSIEHKAKKTKSRKNKVVVDEKTPLIPKTHDADAEGLDEFNGASFSGAVFNLSTTAIGAGIMGLPACVKKLGMVPGLLAIILTALLTEKSIGFMIRNSRAGNLSSYGNLVGDSFGKFGKALVQICVIINNIGMLIIYMIIIGDVISGTSSSEIHHSGVLEGWFGVHWWTGRTFVLLFTTFAVFAPLSCFKRIDSLRYTSALSFGLAVAFLVIAVGISIFKIAIGGIGMPRLFPIITDVASVFELFTVTPVVVTAYLCHFNVHSIDNELEDSSQIHGIVRTSLTLCASVYLLTSFFGFLLFGEGTLDDVLANFDSDLGIPFGSVLNDAVRFSYAAHLVLVFPVVFYAVRINLDGLIFPSSRPLVLDNFRFASITMALIVASFLGANFIPSIWDIFQFTGATAAASLSFIFPSAITLRDRYNIGTKKDKILSVFMIVLAVFANVVAVYSDAFALIKNSTTKRE* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0331 464 Pfam Transmembrane amino acid transporter protein 46 448 IPR013057 -
Gso19g0331 464 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 7 460 - -
Gso19g0331 464 PANTHER AMINO ACID TRANSPORTER 7 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0331 Gso-Chr19 5301808 5306674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0331 21 460 Amino Acid or Auxin Permease AAAP Family AT5G38820 62.443 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0331 K14207 - gmx:100785277 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0331 19 5301808 5306674 Gso18g2270 18 55576992 55580702 PCT
Gso19g0331 19 5301808 5306674 Gso8g2092 8 22540469 22544258 PCT
Gso18g2270 18 55576992 55580702 Gso19g0331 19 5301808 5306674 PCT
Gso8g2092 8 22540469 22544258 Gso19g0331 19 5301808 5306674 PCT