Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0304 ATGGGGAGAGGAAGGGTTCAGCTGAAGCAGATCGAGAACAAAATCAGCCGCCAAGTGACGTTTTCCAAAAGGAGAACTGGGCTGCGAAAGAAAGCTAATGAAATCTCTGTGCTCTGTGATGCTCAAGTGGCACTGATTGTGTTCAATGCTAAAGGGAAGCTTTTTGAGTATTCTTCTGAATCCAGCATGGAAAACGTCCTGGAACGATATGAGAGACATACTCATATAGGGAAACTTGTTGGAGATGGTGATGAATCACAGGGAAACTGGTCCTTACAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAGGAACTTGAGGAACTTTGTGGGAGAAGATCTGGATCCCTTAAACTTGAGAGAGCTTCAGAGTCTAGAGCATCAGCTTGAGACAGCTATAAAGCGCATCCGAACTAGAAAGAACCAAGTTATGAATGAATCCATCTCAGATCTGCAGAAAAAGGCAAGGCAATTGCAAGAGCAAAATGGCATCCTTACAAAGAAGATTAAGGAGAAAGGGAAGGAAGTGGTTGAACGTCCACACTGCGGACCAGAAACCTTAGGTCTAACTTGTCCTCCAGAGCTACAACGACAGCAAAGAGTATTTCCTTCTTTAACACTCTGTGAGACTTTACAAGCAGGGCATCTGGAGGAAGTTGTTGAAGCACGAACGGTTCCTACTGCCAGCACTCACATCCCACCATGGATGCTGCATCCATTTACAAGATAA 735 0.4476 MGRGRVQLKQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSSESSMENVLERYERHTHIGKLVGDGDESQGNWSLQCFKLTGKVEVLERNLRNFVGEDLDPLNLRELQSLEHQLETAIKRIRTRKNQVMNESISDLQKKARQLQEQNGILTKKIKEKGKEVVERPHCGPETLGLTCPPELQRQQRVFPSLTLCETLQAGHLEEVVEARTVPTASTHIPPWMLHPFTR* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0304 244 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Gso19g0304 244 PANTHER MADS BOX PROTEIN 1 219 - -
Gso19g0304 244 Coils Coil 121 177 - -
Gso19g0304 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso19g0304 244 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Gso19g0304 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso19g0304 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso19g0304 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso19g0304 244 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso19g0304 244 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gso19g0304 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso19g0304 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso19g0304 244 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso19g0304 244 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 219 - -
Gso19g0304 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0304 Gso-Chr19 4546777 4564134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0304 1 174 MADS-box Gene Family AT1G26310 62.712 2.32e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso19g0304 K-box 5.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0304 K09264 - gmx:100820188 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2239 18 55330515 55338827 Gso19g0304 19 4546777 4564134 PCT
Gso8g2062 8 22028804 22041050 Gso19g0304 19 4546777 4564134 PCT