Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0303 ATGGGGAGGGGAAGAGTGGAACTGAAAAGGATAGAGAACAAGATAAACAGGCAGGTAACGTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCACCCGTGGCAAGCTTTATGAATTCTGCAGCACCAACAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGCAGAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAAAGGAACCTTCTTGGTGAAGACTTGGGCCCATTAAATACCAAAGATCTTGAGCAGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAGACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGGAGCATATGTTGGTGGAAGCAAACAGATCTTTGACCATGAAGCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGAGCAAAGTATGCCATATGGAACCCAAAATGCTCACTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACAACTCAAGCTCAACAAGTCAATGGATTTATTCCTGGATGGATGCTTTGA 750 0.4587 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTNSMLKTLERYQKCSYGAVEVSKPGKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLTMKLEEINSRNQYRQTWEAGEQSMPYGTQNAHSQGFFQPLECNPTLQIGSDYRYIPEASEQQLAATTQAQQVNGFIPGWML* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0303 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso19g0303 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso19g0303 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso19g0303 249 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso19g0303 249 PANTHER MADS BOX PROTEIN 1 236 - -
Gso19g0303 249 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 236 - -
Gso19g0303 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gso19g0303 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso19g0303 249 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso19g0303 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso19g0303 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso19g0303 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso19g0303 249 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Gso19g0303 249 Coils Coil 125 145 - -
Gso19g0303 249 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0303 Gso-Chr19 4523330 4529738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0303 1 249 MADS-box Gene Family AT5G15800 71.103 6.00e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso19g0303 K-box 9.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0303 K09264 - gmx:732643 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0348 13 14958204 14964121 Gso19g0303 19 4523330 4529738 GST
Gso19g0303 19 4523330 4529738 Gso18g2238 18 55311800 55317831 PCT
Gso19g0303 19 4523330 4529738 Gso8g2061 8 22011937 22017546 PCT
Gso18g2238 18 55311800 55317831 Gso19g0303 19 4523330 4529738 PCT
Gso8g2061 8 22011937 22017546 Gso19g0303 19 4523330 4529738 PCT