LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso19g0294	ATGAGGCTTGTCGTCTCAGCTCTTTGTGTTCTTGTGTTATTCTCTTGTGCAGTTGCTTATGATCCTTTGGATCCAAACGGAAACGTAACAATCAAATGGGATGTAATGTCTTGGACACCAGATGGCTATGTGGCTGTGGTAACAATGCACAACTTCCAAATGTTTCGGCACATCATGAATCCTGGATGGACCTTGGGATGGACATGGGCAAAGAAAGAAGTCATTTGGTCCATGATAGGAGCTCAAACCACAGAACAAGGAGATTGCTCTAAGTTCAAAGGCAACATACCTCATTGCTGCAAGAAAATTCCCACAGTTGTGGACCTTCTCCCTGGTGTACCTTACAACCAGCAATTCTCAAACTGCTGCAAGGGTGGAGTAGTGGCAGCATGGGGCCAAGATCCTTCACAAGCTATCTCTTCCTTCCAAGTGAGTGTAGGCCAAGCTGGTACCTCAAACAAGACAGTTAAACTTCCCAAGAACTTCACTCTCTTTGCTCCAGGACCAGGCTACACTTGTGGCCCTGCAAAGATTGTTCCTTCCACCAATTTTCTTACGCCTGACAAGCGCCGCAAGACTCAAGCACTAATGACATGGAATGTTACCTGCACATACTCACAGTTTCTGGCAAGAAAGAACCCAAGTTGTTGTGTATCTTTGTCATCCTTTTACAATGAAACCATTACCCCTTGTCCCTCTTGTGCATGTGGCTGCCAGAACAAGAAGCATTGTGTCAAGGGAAACTCCAAAATTCTCAGCATGGTGGGGGTTCACACTCCAAAGAAAGACAATGAACCATTGCTGCAGTGCACTCATCACATGTGTCCAATCAGGGTCCACTGGCATGTGAAGACTAACTATAAGGACTATTGGCGAGTCAAGGTTGCCATAACAAACTTCAATTACAGAATGAATCACTCCCTTTGGTCTCTTGCTGTTCAGCATCCAAATCTCAACAATCTCACACAAGTTTTCAGTTTCAATTACAAGCCACTTCTTCCCTATGGATCCATAAATGATACTGGCATGTTCTATGGCATGAAGTACTTCAATGATCTTCTAATGGAAGCTGGACCAACTGGGAATGTTCAATCAGAGTTGCTTCTTCAGAAGGACAAGGATGCATTCACATTCAAGCAGGGTTGGGCATTTCCTCGCAAGGTTTACTTTAATGGTGATGAATGCATGCTGCCACCACCTGACACCTACCCTTTTCTCCCTAACTCTGCTCCTGCAAGCCTACTTAACTTCCCTGCGTTCATGTTGTTATTGTTCTTCTTGCTTGCAGTTTGGTGA	1296	0.4475	MRLVVSALCVLVLFSCAVAYDPLDPNGNVTIKWDVMSWTPDGYVAVVTMHNFQMFRHIMNPGWTLGWTWAKKEVIWSMIGAQTTEQGDCSKFKGNIPHCCKKIPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSQAISSFQVSVGQAGTSNKTVKLPKNFTLFAPGPGYTCGPAKIVPSTNFLTPDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCQNKKHCVKGNSKILSMVGVHTPKKDNEPLLQCTHHMCPIRVHWHVKTNYKDYWRVKVAITNFNYRMNHSLWSLAVQHPNLNNLTQVFSFNYKPLLPYGSINDTGMFYGMKYFNDLLMEAGPTGNVQSELLLQKDKDAFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNSAPASLLNFPAFMLLLFFLLAVW*	432

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso19g0294	431	PIRSF	COBRA	1	431	IPR006918	GO:0010215\|GO:0031225
Gso19g0294	431	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	16	-	-
Gso19g0294	431	PANTHER	PROTEIN COBRA	4	429	IPR006918	GO:0010215\|GO:0031225
Gso19g0294	431	Pfam	COBRA-like protein	43	206	IPR006918	GO:0010215\|GO:0031225
Gso19g0294	431	PANTHER	COBRA-LIKE PROTEIN	4	429	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso19g0294	Gso-Chr19	4338044	4341123	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso19g0294	1	427	COBRA Gene Family	AT3G29810	66.515	0.0	624

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso19g0294	-		-	gmx:100798678	893.649

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gso19g0294	19	4338044	4341123	Gso18g2223	18	55198206	55202053	PCT
Gso19g0294	19	4338044	4341123	Gso8g2053	8	21851738	21855475	PCT
Gso18g2224	18	55202062	55204727	Gso19g0294	19	4338044	4341123	PCT
Gso8g2054	8	21857642	21860392	Gso19g0294	19	4338044	4341123	PCT

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