Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0294 ATGAGGCTTGTCGTCTCAGCTCTTTGTGTTCTTGTGTTATTCTCTTGTGCAGTTGCTTATGATCCTTTGGATCCAAACGGAAACGTAACAATCAAATGGGATGTAATGTCTTGGACACCAGATGGCTATGTGGCTGTGGTAACAATGCACAACTTCCAAATGTTTCGGCACATCATGAATCCTGGATGGACCTTGGGATGGACATGGGCAAAGAAAGAAGTCATTTGGTCCATGATAGGAGCTCAAACCACAGAACAAGGAGATTGCTCTAAGTTCAAAGGCAACATACCTCATTGCTGCAAGAAAATTCCCACAGTTGTGGACCTTCTCCCTGGTGTACCTTACAACCAGCAATTCTCAAACTGCTGCAAGGGTGGAGTAGTGGCAGCATGGGGCCAAGATCCTTCACAAGCTATCTCTTCCTTCCAAGTGAGTGTAGGCCAAGCTGGTACCTCAAACAAGACAGTTAAACTTCCCAAGAACTTCACTCTCTTTGCTCCAGGACCAGGCTACACTTGTGGCCCTGCAAAGATTGTTCCTTCCACCAATTTTCTTACGCCTGACAAGCGCCGCAAGACTCAAGCACTAATGACATGGAATGTTACCTGCACATACTCACAGTTTCTGGCAAGAAAGAACCCAAGTTGTTGTGTATCTTTGTCATCCTTTTACAATGAAACCATTACCCCTTGTCCCTCTTGTGCATGTGGCTGCCAGAACAAGAAGCATTGTGTCAAGGGAAACTCCAAAATTCTCAGCATGGTGGGGGTTCACACTCCAAAGAAAGACAATGAACCATTGCTGCAGTGCACTCATCACATGTGTCCAATCAGGGTCCACTGGCATGTGAAGACTAACTATAAGGACTATTGGCGAGTCAAGGTTGCCATAACAAACTTCAATTACAGAATGAATCACTCCCTTTGGTCTCTTGCTGTTCAGCATCCAAATCTCAACAATCTCACACAAGTTTTCAGTTTCAATTACAAGCCACTTCTTCCCTATGGATCCATAAATGATACTGGCATGTTCTATGGCATGAAGTACTTCAATGATCTTCTAATGGAAGCTGGACCAACTGGGAATGTTCAATCAGAGTTGCTTCTTCAGAAGGACAAGGATGCATTCACATTCAAGCAGGGTTGGGCATTTCCTCGCAAGGTTTACTTTAATGGTGATGAATGCATGCTGCCACCACCTGACACCTACCCTTTTCTCCCTAACTCTGCTCCTGCAAGCCTACTTAACTTCCCTGCGTTCATGTTGTTATTGTTCTTCTTGCTTGCAGTTTGGTGA 1296 0.4475 MRLVVSALCVLVLFSCAVAYDPLDPNGNVTIKWDVMSWTPDGYVAVVTMHNFQMFRHIMNPGWTLGWTWAKKEVIWSMIGAQTTEQGDCSKFKGNIPHCCKKIPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSQAISSFQVSVGQAGTSNKTVKLPKNFTLFAPGPGYTCGPAKIVPSTNFLTPDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCQNKKHCVKGNSKILSMVGVHTPKKDNEPLLQCTHHMCPIRVHWHVKTNYKDYWRVKVAITNFNYRMNHSLWSLAVQHPNLNNLTQVFSFNYKPLLPYGSINDTGMFYGMKYFNDLLMEAGPTGNVQSELLLQKDKDAFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNSAPASLLNFPAFMLLLFFLLAVW* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0294 431 PIRSF COBRA 1 431 IPR006918 GO:0010215|GO:0031225
Gso19g0294 431 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Gso19g0294 431 PANTHER PROTEIN COBRA 4 429 IPR006918 GO:0010215|GO:0031225
Gso19g0294 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
Gso19g0294 431 PANTHER COBRA-LIKE PROTEIN 4 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0294 Gso-Chr19 4338044 4341123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0294 1 427 COBRA Gene Family AT3G29810 66.515 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0294 - - gmx:100798678 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0294 19 4338044 4341123 Gso18g2223 18 55198206 55202053 PCT
Gso19g0294 19 4338044 4341123 Gso8g2053 8 21851738 21855475 PCT
Gso18g2224 18 55202062 55204727 Gso19g0294 19 4338044 4341123 PCT
Gso8g2054 8 21857642 21860392 Gso19g0294 19 4338044 4341123 PCT