Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0293 ATGTTTTTCCGTTTCAGCTCCCCCTTCGCGATCCGATCCTTCCTCAAATCCCCTCCATGCATTCTGCTTTTCGTTCTCTTCTCTTTCACAGAAGCTTATGATCCACTTGATCCATATGGAAATATCACAATCAAATGGGATATCATAAGTTGGACCCCTGATGGTTATGTTGCTGTTGTTACAATGAACAACTTTCAACAATATCGCCATATCTCGGAGCCTGGGTGGTCGCTTGGATGGACATGGGCGAAGAAGGAGGTAATATGGAGCATGGTGGGAGGGCAGACCACTGAACAAGGGGATTGTTCAAAATATAAAGGAAACATCCCACATTGCTGTAAAAAGAACCCTGTAGTTGTCGATTTACTTCCCGGAACACCTTACAACCAACAAATTGCAAACTGCTGCAAAGGCGGTGTACTCAGCTCGTGGGCACAGGATCAATCCAAGGCGGTTTCAGCATTTCAAGTCAGTGTGGGTAGTGCTGGTACCACTAACAAAACTGTCAAACTGCCAAAAGACTTCACACTGAAAGCGCCAGGACCCGGTTACACATGTGGGCCGGCAACAATTGTGAAACCAACTCTATTTATACAACCAGACAAAAGGAGAGTGACACAAGCACTCATGACATGGAATGTAACATGCACATATTCACAATTTCTTGCTCAGAGAACACCCAGTTGCTGCGTCTCGCTTTCATCTTTCTATAACGATACTGTTGTACCCTGCACTACATGTGCATGTGGCTGCCAGGGCAACTCATCTCAATTAGGGGAATGTGTAGATCCGGACTCGTCACCACATTTGCAATCAGTTGTTTCCAACCCTGGACCTGGAAAGAGTAGTATTACACCTTTGGTTCGATGTACTCGTCATATGTGCCCAATCCGAGTTCACTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGTGTCAAGGTCACTGTTACTAATTTCAATTACGGGATGAATTATTCTAATTGGAATTTGGTTGTTCAACATCCAAATTTCGACAATCTGACCCAACTTTTCAGTTTCAACTACAAATCAATTACTCCCTACGGATCAATAAATGATACAGCAATGCTTTGGGGAGTTAAGTTCTACAATGATTTTCTCATGCAAGCTGGCCCTCTTGGTAATGTACAATCAGAACTACTATTCAGAAAGGATAAATCAACTTTCACTTTTGACAAGGGTTGGGCCTTCCCTCGGAGAGTCTATTTCAATGGCGACGTTTGTGTGATGCCGCCACCCGATTCTTATCCATGGTTACCTAATGCTGGTTCCAAGCAAGAGGTTTCCCTGCTTGCTTTGGTGATGTCCTCTTTGGTAGCCTTGGTATTATATGCATATGCTTAA 1365 0.4388 MFFRFSSPFAIRSFLKSPPCILLFVLFSFTEAYDPLDPYGNITIKWDIISWTPDGYVAVVTMNNFQQYRHISEPGWSLGWTWAKKEVIWSMVGGQTTEQGDCSKYKGNIPHCCKKNPVVVDLLPGTPYNQQIANCCKGGVLSSWAQDQSKAVSAFQVSVGSAGTTNKTVKLPKDFTLKAPGPGYTCGPATIVKPTLFIQPDKRRVTQALMTWNVTCTYSQFLAQRTPSCCVSLSSFYNDTVVPCTTCACGCQGNSSQLGECVDPDSSPHLQSVVSNPGPGKSSITPLVRCTRHMCPIRVHWHVKLNYKEYWRVKVTVTNFNYGMNYSNWNLVVQHPNFDNLTQLFSFNYKSITPYGSINDTAMLWGVKFYNDFLMQAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRVYFNGDVCVMPPPDSYPWLPNAGSKQEVSLLALVMSSLVALVLYAYA* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0293 454 PIRSF COBRA 8 454 IPR006918 GO:0010215|GO:0031225
Gso19g0293 454 PANTHER COBRA-LIKE PROTEIN 16 453 - -
Gso19g0293 454 PANTHER PROTEIN COBRA 16 453 IPR006918 GO:0010215|GO:0031225
Gso19g0293 454 Pfam COBRA-like protein 56 219 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0293 Gso-Chr19 4333131 4337770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0293 14 452 COBRA Gene Family AT3G02210 73.529 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0293 - - gmx:100815926 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0355 13 15061140 15065536 Gso19g0293 19 4333131 4337770 GST
Gso19g0293 19 4333131 4337770 Gso18g2222 18 55188434 55192528 PCT
Gso18g2223 18 55198206 55202053 Gso19g0293 19 4333131 4337770 PCT
Gso8g2053 8 21851738 21855475 Gso19g0293 19 4333131 4337770 PCT