LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso19g0242	ATGGCGGAACCGTCGTCCACCGCCGCCACCGCCGCCACCGCTGCCACCGCTGCCACCGCTGCCACCGCCGCCACCGCTTCCACCGCTGATCCTCCGGCGCCAGTGACTAAAAGCTGGGCCGACGAAGCAGACGAAGAAACCAACAACACCTCCACCGCCGAGTCAGAAAGCTCCTCCATTAACCTGGAAGCGTTAACCATCGACGATAAAGAAAAGAACTCTTCCAAATTCTTGGATGATCCCGATGATTCCAATATCCAAGCGGTTACTTCTGGCGACACGCCGTACACCTCGGCGGCGAGGTTCGAGGACCTGAGCCTCTCGCCGGAGCTTTTGAAGGGGCTCTATGTGGAGATGAAGTTTGAGAAGCCGAGCAAGATCCAGGCGATAAGCTTGCCGATGATCCTGAGCCCGCCCCACCGGGACCTGATCGCGCAGGCGCACAATGGCTCCGGCAAGACTACATGTTTCGTGCTTGGGATGCTCAGCCGCGTCGACCCAAAGGTGCAGGCGCCGCAGGCGCTCTGTGTCTGCCCCACCCGGGAGCTGGCCATTCAGAACGTGGAGGTGCTCCGCAGGATGGGGAAGTACACCGGGATTGCATCTGAGTGCCTTGTGCGGTTGGACCGGGATGCCGTTCATGTATCGAAAAGGGCACCTATTATGGCGCAGGTGGTGATTGGGACCCCAGGGACAATCAAGAAGTTCATTAGCTTCAAGAAACTTGGGACCTCGAGGTTGAAGATTCTTGTTTTCGACGAGGCTGATCAAATGCTTGCGCAGGAAGGATTTAGAGATGATTCTTTGAAGATAATGAAAGATATAGAAAAAGACAATAAAAAGTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACCGTCAAGAATTTCATTTCAAGGACAGTCAAGATGGATCATAATAAACTCTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAGTATAAAGTGTATTGTCCCGATGAACTTGCTAAGATTGATGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTATGGCCACAAGAGATAGTGCAAGATTATTGCACCAAGCACTTGTTAATTTGGGCTATGAGGTTACATCTATACAAGGTTCTCTTAGTAATGAAGAGAGAGACAAAGTTGTCAAGGAGTTCAAAGATGGTTTGACTCAAGTTCTTATATCAACAGATATTCTTGCTCGTGGCTTTGATCAGCAACAGGTTAATTTGGTCATCAATTATAATCTTCCAAATAAACACAGTTTACGGGATGAACCAGATTATGAAGTGTATCTGCACAGGGTTGGCAGAGCTGGGCGTTTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGATGAAAATGATGAAAGGCTCATGTCGAAGATTGAAAACCATTTTGGCACTTGTGTAACTGAGGTGCGAGCTCAAAGTGTTGAAGAATATAAAGCCGCTCTCAAGGAAGCCGGTTTACTGCAATGA	1515	0.4805	MAEPSSTAATAATAATAATAATAATASTADPPAPVTKSWADEADEETNNTSTAESESSSINLEALTIDDKEKNSSKFLDDPDDSNIQAVTSGDTPYTSAARFEDLSLSPELLKGLYVEMKFEKPSKIQAISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCVCPTRELAIQNVEVLRRMGKYTGIASECLVRLDRDAVHVSKRAPIMAQVVIGTPGTIKKFISFKKLGTSRLKILVFDEADQMLAQEGFRDDSLKIMKDIEKDNKKCQVLLFSATFNDTVKNFISRTVKMDHNKLFVKKEELSLDAVKQYKVYCPDELAKIDVIKDYIFEIGENVGQTIIFMATRDSARLLHQALVNLGYEVTSIQGSLSNEERDKVVKEFKDGLTQVLISTDILARGFDQQQVNLVINYNLPNKHSLRDEPDYEVYLHRVGRAGRFGRKGAVFNLICDENDERLMSKIENHFGTCVTEVRAQSVEEYKAALKEAGLLQ*	505

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso19g0242	504	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	134	309	IPR014001	-
	Gso19g0242	504	Pfam	Helicase conserved C-terminal domain	335	453	IPR001650	-
	Gso19g0242	504	MobiDBLite	consensus disorder prediction	65	79	-	-
	Gso19g0242	504	SMART	helicmild6	364	453	IPR001650	-
	Gso19g0242	504	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	100	129	IPR014014	GO:0003724
	Gso19g0242	504	MobiDBLite	consensus disorder prediction	1	92	-	-
	Gso19g0242	504	Gene3D	-	79	315	IPR027417	-
	Gso19g0242	504	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	338	501	IPR001650	-
	Gso19g0242	504	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	172	471	IPR027417	-
	Gso19g0242	504	CDD	SF2_C_DEAD	322	462	-	-
	Gso19g0242	504	CDD	DEADc_DDX19_DDX25	107	310	-	-
	Gso19g0242	504	Gene3D	-	316	500	IPR027417	-
	Gso19g0242	504	SMART	ultradead3	120	325	IPR014001	-
	Gso19g0242	504	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	79	482	-	-
	Gso19g0242	504	MobiDBLite	consensus disorder prediction	1	32	-	-
	Gso19g0242	504	Pfam	DEAD/DEAH box helicase	126	297	IPR011545	GO:0003676\|GO:0005524
	Gso19g0242	504	PANTHER	DEAD-BOX HELICASE DBP80	79	482	-	-
	Gso19g0242	504	MobiDBLite	consensus disorder prediction	50	64	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso19g0242	Gso-Chr19	3467514	3471374	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso19g0242	82	485	Eukaryotic Initiation Factors Gene Family	AT3G19760	35.109	5.02e-69	225

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso19g0242	K18655		-	gmx:100784739	929.472