Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0237 ATGGCGGCGGCGAAACCCCAACGCACTCCGCAGGAAGTGGAGGACATCGTCATCCGCAAAATCTTTCTAGTCTCGATCACCGAAATCGCCACCACTACGGATTCGAGAATCGTGTATTTAGAACTGACCGCGGCCGAGATTCTCAGCGAGGACAAGGAGCTCCGCCTCTCGCGCGATTGCATGGAGAGGGTTTTAATCGACCGTCTCTCCGGCGAATTCGCCGGAGCCGTAGACGAGTCTCCGTTCCAGTACCTCGTTGGCTGTTACCACCGAGCGCACGAGGAAGGCAAGAAAATCGCGAACATGAAGGACAAAACCCTACGGTCGGAGATGGAGGCGGTGGTGAGGCAGGCCAAGAAGCTCTGCGTCAACTACTGCCGGATTCATTTAGCAAATCCCGAGCTCTTTCCGAGCCGGGGTTCGGCGAATTCGGGCGGTGCCAATTCGCCGTTGCTGTCGCTGATTTTGGCGGAGGTAGGCGGCGGGAACGTGTTCGGCGGTGGCGGCGGAGGGGCAAAGAGTCCGCCGGGGTTTCTGGAGGAGTTTTTCAGGGACCCGGATTTTGACAGCTTGGACAAGATTCTAAAGGGTTTGTATGAGGAGCTGAGAGGGAGTGTGATGAAGGTTTCTGCTCTTGGGAACTTTCAGGACTCATTGAGGGCTTTGTTGTATTTGGTTAGGTTTCCCGTTGGTGCTAAGTCTCTTGTGAATCATGAATGGTGGATTCCCAAAGGGGTTTATATGAATGGCCGTGCTATTGAGATGACCAGCATTTTGGGTCCCTTTTTTCATATCAGTGCTCTTCCTGATCATGCTTTTTTCAAGGGCCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGGCCTGCTGATTTGTTATCTTCATTTTCCACCATCAAAACTGTCATGAACAACTTATATGATGGCCTAGCTGAAGTACTCCTCATCCTCCTTAAAAGCCAAGATACTCGTGAAAGTGTACTTGAGTATCTTGCGGAGGCGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGACCCTATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTCATGCTTCGTTTATGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCAAAATATGTGCACTGCTCAAACCGCTTGAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTACTGAATGGCTTAATAGTAAAAACCCAGCTACAACTGGGGCAACCAATCAATATAGTGATGATAAAAAACGCTTGCAACAATCCCAAGAGGCCAGCAGTTCTGGTAGTAATAATTTTGGTGAGCTGTCAAATGAAAATTCTGCACGTGCTGAAAAGACAAAATATTCATTTATTTGTGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTGGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTCGGTGTGAAGATGCTCTTGCCACACTTAAAGCCATGCAGGAGCGGACACCCACCCCTCAGGCAGAATTGGATATAAATCGGCTTGAGAAAGAAATGGAGTTGTACTCACAGGAAAAACTTTGTTATGAGGCTCAGATATTGAGGGATAACACTCTTATTCAAAATGCGCTTTCCTTGTACCGCTTGATGATTATTTGGTTGGTTGGCTTGGTGGGTGGATTTAAGATGCCTCTACCACCAACTTGCCCAATGGAATTTGCTACCATGCCTGAACATTTTGTGGAAGATGCCATGGAACTTTTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGAAGAATTTATGAACTTTATAATTATGTTCATGGCCAGCCCTGAATTTATCAAAAACCCATATCTTAGAGCAAAGATGGTTGAAGTATTGAACTGCTGGATGCCCCGCAGGAGCGGCTCAACTGCTACAGCCACTCTATTTGAAGGCCACCAACTCTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTCTACGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGACAAGTTTAACATCCGCCATAATATTGCTGAACTCCTTGAATACCTGTGGCAAGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACGGTCGAGTGGGAGCGACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAACGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTACTTCCCGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGTCCTCAAAGAAAATCGCTTAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCTAAGCATTTGCTAAAACAGATTGTGCACATATATGTTCATCTAGCTAGGGGTGACACGAATTCCATCTTCCCAGCTGCCATCTCAAAGGATGGCCGGTCATACAATGATCAGTTGTTTAGTGCTGGGGCAGATGTCCTTCACAGAATTGGGGAGGATGGGAGAATTATACAGGAATTTATTCAACTTGGTGCTAAAGCTAAAGTTGCTGCTTCAGAGGCAATGGATGCTGAAGCTACTCTAGGGGAGATACCAGATGAATTCCTGGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTGTCATTCAGAGGCATCTTCTTAGTGATAGTACTGACCCATTCAACCGTTCTCATCTTACTGCGGATATGTTGATTCCCGATGATGCGCTAAAAGCTAGAATTGAGGAGTTTGTCAGGTCTCAGGAAATGAAGAAACACTTGAGCCTACAGAGTACCAAGGCCACAATTCAGACTACAAATGGGGAAACAATGTTGGTTGATTAG 3111 0.4497 MAAAKPQRTPQEVEDIVIRKIFLVSITEIATTTDSRIVYLELTAAEILSEDKELRLSRDCMERVLIDRLSGEFAGAVDESPFQYLVGCYHRAHEEGKKIANMKDKTLRSEMEAVVRQAKKLCVNYCRIHLANPELFPSRGSANSGGANSPLLSLILAEVGGGNVFGGGGGGAKSPPGFLEEFFRDPDFDSLDKILKGLYEELRGSVMKVSALGNFQDSLRALLYLVRFPVGAKSLVNHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDHAFFKGQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVLLILLKSQDTRESVLEYLAEAININASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHCSNRLKLSGLTALHASSEEVTEWLNSKNPATTGATNQYSDDKKRLQQSQEASSSGSNNFGELSNENSARAEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALATLKAMQERTPTPQAELDINRLEKEMELYSQEKLCYEAQILRDNTLIQNALSLYRLMIIWLVGLVGGFKMPLPPTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLEEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSTATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTVEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPAAISKDGRSYNDQLFSAGADVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDDALKARIEEFVRSQEMKKHLSLQSTKATIQTTNGETMLVD* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0237 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 939 1018 IPR013083 -
Gso19g0237 1036 PANTHER - 1 1016 - -
Gso19g0237 1036 SUPERFAMILY RING/U-box 932 1011 - -
Gso19g0237 1036 PANTHER UBIQUITINATION FACTOR E4 1 1016 IPR045132 GO:0000151|GO:0030433|GO:0034450
Gso19g0237 1036 SMART Ubox_2 943 1006 IPR003613 GO:0004842|GO:0016567
Gso19g0237 1036 Coils Coil 518 545 - -
Gso19g0237 1036 MobiDBLite consensus disorder prediction 418 457 - -
Gso19g0237 1036 Pfam Ubiquitin elongating factor core 259 923 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Gso19g0237 1036 Pfam U-box domain 940 1011 IPR003613 GO:0004842|GO:0016567
Gso19g0237 1036 ProSiteProfiles U-box domain profile. 939 1013 IPR003613 GO:0004842|GO:0016567
Gso19g0237 1036 CDD RING-Ubox_UBE4A 942 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0237 Gso-Chr19 3405984 3414281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0237 1 1036 U-box Gene Family AT5G15400 75.286 0.0 1617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0237 K10597 - gmx:100811444 2006.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0237 19 3405984 3414281 Gso19g0237 19 3405984 3414281 ECH
Gso13g0398 13 15640362 15649907 Gso19g0237 19 3405984 3414281 GST