Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0229 ATGGGTTGCATAAGCTCCAAGAATGCGGTTGCCGGAGCTTGTTCTCCGTCTCCTGCGGTGCTGAACATCGCGGAGGGACATTCCGGGTTGACGGTTCTGGAATCGAAAACAGGGTCAGAGAATGAGAGGAACAACAAGAAGTTGAAGAAGAACAATTCAAAGAGTAGTAGTGGGGGTTTCAGCTTCAGGCTTGGGTTGGCTCCAAAGCATGTGGAGGCTGAACAGAATGCTGCTGGTTGGCCTCCTTGGCTCACAGCTACTGCAGCTGAAGCCATTCAAGGATGGATCCCTCTCAAAGCTGATTCTTTTCAAAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACTGGGAAGATGTTTGCTTTGAAGAAGGTGCGCTTTGACAATTTCCAACCTGAGAGCATCAGGTTCATGGCAAGAGAAATAACAATCCTTCGTAGGCTTGATCACCCAAATATCATGAAATTGGAAGGCATAATCACTTCTCGCCTCTCAAATAGCATATACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCACGTCCTGATATTGTGTTCTCCGAATCACAGATAAAATGTTACATGAGACAGCTATTAAGTGGACTTGAGCATTGTCATATGCGTGGCATCATGCACAGAGACATCAAAGTATCAAATATCTTGTTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAACACAAATGGGAAGCATCATTTGACAAGTCGCGTTGTGACTTTGTGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAACTATGGAGTGTCTGTGGATCTGTGGAGTGTTGGCTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGCTGTGTGGTTCTCCTCCTGAGGACTTCTGGAAAAAGACTAGGCTTCCTCATGCAACAATGTTTAAACCTCAGACTAATTATGAAAGCTCTCTTCGGGAGAGGTGTGCAGATTTTCCTGCATCTGCTGTTAATCTACTCGAGACTTTACTGTCGATCGATTCTGGCAACCGAGGGACTGCCTCATCTGCCCTAATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATGCATCAAGCCTGCCGAAGTATCCTCCTAGCAAAGAAATGGATGTAAAAAATATTGAAGATTCATCCAAGAAAAAAACTGGAGGTAAAATGAGAGAGGTTGCAACATCAAGAAGGCAGCAAAGACGAGTCAGTAAAATTTTGCAAGATCCAAACAATTTTGGCAAATCAACTTCAAAAGAGGACATGCAGAACATTTCTCAAAATGCTCGTAGAGATGATGGTAAATCACATCTTACTAAGGGAAAAGGAGGAGCCATGCACAAAGATTATACAAAGCCTCATATGGATGCTATGTCTGAGACCTCCCAAATGAATGTTGCTAATGGTAATGGCTATAGTGTGGGATCTAATAATACCTTTACATGGGTAAAAAGGAGAAAGCAAGATGCTTCATCAACTCTATCAGATGGATCAAGAAGCAAAATTAGTGCACTTGATCCAAACTTTGCAAAAGGAACATATGACTTAACCACACAAAGGGTGTCCATGGATTTTGATCCCGCAGAACTGATGAATGCTCAGGGCGACCGAGGGCGTGCTGTTCGTAAATCAAGATTTGGAAGAGACAACAGATGA 1761 0.4282 MGCISSKNAVAGACSPSPAVLNIAEGHSGLTVLESKTGSENERNNKKLKKNNSKSSSGGFSFRLGLAPKHVEAEQNAAGWPPWLTATAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFRAREVETGKMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPDIVFSESQIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTINTNGKHHLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEDFWKKTRLPHATMFKPQTNYESSLRERCADFPASAVNLLETLLSIDSGNRGTASSALMSEYFSTKPYACNASSLPKYPPSKEMDVKNIEDSSKKKTGGKMREVATSRRQQRRVSKILQDPNNFGKSTSKEDMQNISQNARRDDGKSHLTKGKGGAMHKDYTKPHMDAMSETSQMNVANGNGYSVGSNNTFTWVKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLTTQRVSMDFDPAELMNAQGDRGRAVRKSRFGRDNR* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0229 586 SMART serkin_6 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0229 586 Gene3D Transferase(Phosphotransferase) domain 1 186 427 - -
Gso19g0229 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Gso19g0229 586 SUPERFAMILY Protein kinase-like (PK-like) 97 392 IPR011009 -
Gso19g0229 586 PANTHER CELL DIVISION PROTEIN KINASE 26 581 - -
Gso19g0229 586 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Gso19g0229 586 ProSiteProfiles Protein kinase domain profile. 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0229 586 MobiDBLite consensus disorder prediction 407 439 - -
Gso19g0229 586 Pfam Protein kinase domain 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0229 586 Gene3D Phosphorylase Kinase; domain 1 90 185 - -
Gso19g0229 586 MobiDBLite consensus disorder prediction 403 484 - -
Gso19g0229 586 MobiDBLite consensus disorder prediction 571 586 - -
Gso19g0229 586 MobiDBLite consensus disorder prediction 440 459 - -
Gso19g0229 586 PANTHER CYCLIN-DEPENDENT KINASE 26 581 - -
Gso19g0229 586 CDD STKc_CDK9_like 103 387 - -
Gso19g0229 586 MobiDBLite consensus disorder prediction 562 586 - -
Gso19g0229 586 MobiDBLite consensus disorder prediction 36 59 - -
Gso19g0229 586 MobiDBLite consensus disorder prediction 460 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0229 Gso-Chr19 3291527 3297931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0229 95 434 Core Cell Cycle Gene Families AT5G10270 46.348 1.39e-106 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso19g0229 Pkinase 1.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0229 - - gmx:100790917 1127.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0405 13 15743247 15749272 Gso19g0229 19 3291527 3297931 GST