Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0218 ATGGATGGATCCGCATGTGTGAGAAAAGGCTTATGGAGTGAAGTGGAAGATACCCTTCTCAGGACCTGTGTGCGACAATATGGTGAAGGACAATGGCACTTAGTCCCTACAAGAGCAGGCTTGAACAGGTGCCGCAAGAGCTGCAGATTGCGGTGGTTGAATTATCTAAAGCCAAATATCAAGAGGGGAGAGTTCACTGAGGACGAAGTTGATTTGATGCAAAGATTGCATAATCTTTTGGGAAACAGATGGTCCTTGATTGCTGGAAGACTTCCAGGAAGAACTCCAAATGATGTGAAAAACTACTGGAACACCTACATTCGAAGGAAGGTATCATCATCTCACAAGGTGGTGATCAATGAAAAGCAAAAGAAAACAACAGTGAAGCCTCATGTGGTGATAAAGCCTAAGGCTCGAACTTTCTCAAGACCTTCACCCTCCGGGTTGAGAGGGAGTAGTGTTCTTAGAGAAGAAGGTGGTGAGAGTGGGGCCAAACACTGCTCAACTCATCATCAAGCATGTGCAGCTTCATCAGAGTACATTAATAATTGGAGTACTGATCAGTGGTGGAAAACTATGATGCACGACAAGGGGGACAACTTAGACAACAACCAATGCTTGTTGGGCTACCAGGATGAGGTTGGGAAGCTCGTGAAAGACAATAATTGTGATGAGAATCTTGCTTCCTTGACAACACAAGAAGGAGAGTTTCTTATAGAAGGGCAAAATTGGAGTGATTTTTTTCTTGATACAAATTTGTGA 762 0.437 MDGSACVRKGLWSEVEDTLLRTCVRQYGEGQWHLVPTRAGLNRCRKSCRLRWLNYLKPNIKRGEFTEDEVDLMQRLHNLLGNRWSLIAGRLPGRTPNDVKNYWNTYIRRKVSSSHKVVINEKQKKTTVKPHVVIKPKARTFSRPSPSGLRGSSVLREEGGESGAKHCSTHHQACAASSEYINNWSTDQWWKTMMHDKGDNLDNNQCLLGYQDEVGKLVKDNNCDENLASLTTQEGEFLIEGQNWSDFFLDTNL* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0218 253 SUPERFAMILY Homeodomain-like 8 103 IPR009057 -
Gso19g0218 253 MobiDBLite consensus disorder prediction 139 162 - -
Gso19g0218 253 CDD SANT 64 107 IPR001005 -
Gso19g0218 253 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Gso19g0218 253 SMART sant 61 109 IPR001005 -
Gso19g0218 253 SMART sant 8 58 IPR001005 -
Gso19g0218 253 CDD SANT 12 56 IPR001005 -
Gso19g0218 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 56 IPR017930 -
Gso19g0218 253 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Gso19g0218 253 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 161 - -
Gso19g0218 253 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Gso19g0218 253 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Gso19g0218 253 Gene3D - 9 61 - -
Gso19g0218 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Gso19g0218 253 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 161 - -
Gso19g0218 253 Gene3D - 63 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0218 Gso-Chr19 3128399 3131069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0218 7 142 MYB Transcription Factor Family AT1G66370 60.284 2.03e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g0218 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0218 - K16166 gmx:100306270 529.25