Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0216 ATGGGACGATCACCATGCTGCGACAAGGTAGGTTTAAAGAAAGGACCATGGACTCCAGAGGAAGATCAGAAGCTCTTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTCAGAGGTGTGGCAAGAGTTGCAGACTAAGATGGACCAATTATCTTAGGCCTGACATTAAGAGGGGAAAATTCAGCTTGCAAGAAGAACAAACCATCATTCAACTTCATGCCCTCTTAGGAAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAAGAACTACTGGAACACGCATATTAAGAAAAGGTTAACTAAAATGGGAATTGACCCTGTGACACACAAGCCTAAAAACGATGCACTTCTCTCTAGTGACGGTCAATCCAAAACCGCTGCAAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCTGAAGCAAGACTTGTAAGAGAGTCAAAAATACGTTCACATTCTCTTCAGCATCAACTTGGAAGTAGTTCTTCTACATTTGCATCTTCATCTTCAGCATCAACTTCAGCTTCAGCTCTCAATAATAATAATAAGCCAGAAGCACAGCGGCCACCACCGCCACCGTCACGATCTTCCCTTGATGTTCTCAAGGCTTGGAATAGTGGAGGGTGGTTAGAATCCAATGAAGGAAATGGTGGCATTGTAAGCAATGTTGGGGTAAGTGGGGACCTTGAGTCTCCTACTTCTACACTATCTTTCTCTGAGAATGCACCACCAATTATGAACGGAATTGGAGGAGAAAACAATAATAATAATGATAGTGCAATGCCTATGATTGAGTTTGTGGGGAATTCAGGAAATTCTTCTTCTCTTGTGAAAGAAGAAGCTGAGCAAGAGTGGAAAAGTACTTATGATAGTTCCATCACTACTACTTTTAGTTCTGGTCTGCATGAATTCACAATGAACATGGAAGGCACGTGGGCCTCTGAGTCCCTCAGGACTAGTGGCTCACATGACATTGTTGAAGAAGGCTTCACCAATCTTTTGCTTAAAACAAACTCTGACGATCCAAGTTTGTCATCAGAGGATGGTGGAGAGTCCAAGAACGGTGATGGTGGTGGTGGCACTAACAGTGATTTTTACGAAGATAATAATAATTATTGGAATAGCATTCTCAATTTAGTGAATTCTTCTCCTTCTCATTCCCCTATGTTCTAA 1233 0.4323 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHIKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKIRSHSLQHQLGSSSSTFASSSSASTSASALNNNNKPEAQRPPPPPSRSSLDVLKAWNSGGWLESNEGNGGIVSNVGVSGDLESPTSTLSFSENAPPIMNGIGGENNNNNDSAMPMIEFVGNSGNSSSLVKEEAEQEWKSTYDSSITTTFSSGLHEFTMNMEGTWASESLRTSGSHDIVEEGFTNLLLKTNSDDPSLSSEDGGESKNGDGGGGTNSDFYEDNNNYWNSILNLVNSSPSHSPMF* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0216 410 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso19g0216 410 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso19g0216 410 MobiDBLite consensus disorder prediction 356 386 - -
Gso19g0216 410 CDD SANT 69 112 IPR001005 -
Gso19g0216 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso19g0216 410 Gene3D - 13 66 - -
Gso19g0216 410 CDD SANT 16 61 IPR001005 -
Gso19g0216 410 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso19g0216 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso19g0216 410 SMART sant 66 114 IPR001005 -
Gso19g0216 410 SMART sant 13 63 IPR001005 -
Gso19g0216 410 PANTHER TRANSCRIPTION FACTOR MYB106 1 403 - -
Gso19g0216 410 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso19g0216 410 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso19g0216 410 MobiDBLite consensus disorder prediction 132 147 - -
Gso19g0216 410 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 403 - -
Gso19g0216 410 MobiDBLite consensus disorder prediction 171 220 - -
Gso19g0216 410 Gene3D - 69 116 - -
Gso19g0216 410 MobiDBLite consensus disorder prediction 121 147 - -
Gso19g0216 410 MobiDBLite consensus disorder prediction 173 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0216 Gso-Chr19 3009385 3012362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0216 1 410 MYB Transcription Factor Family AT3G01140 53.976 2.54e-125 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g0216 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0216 K09422 - gmx:100101835 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0216 19 3009385 3012362 Gso19g0216 19 3009385 3012362 ECH