Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0213 ATGCAAGCAATGGAGAATAACAATTATCAGAGAGAAATAATGGAAGAGCAAAGGTTTGAATTGCCACCAGGATTCAGGTTTCATCCAACAGACGAAGAACTCATCACTCACTACCTCTCACAGAAGGTTCTTGATAGCTGCTTCTGTGCAAGAGCCATTGGAGAGGCTGATTTGAACAAGTGTGAACCATGGGATTTGCCTTGTATGGCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTCAAAGGACTAATAGGGCCACTGGTGCTGGATACTGGAAGGCCACAGGCAAGGACAGAGAGATATACAAGGCAAAGACACTGATTGGAATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCAAGTGGTGAAAAATCTAACTGGGTCATGCATGAATACAGATTAGAAAATGAACATTCTGTGCAAAATCCACCCAAAAAGGCCATGAATGATTGGGCCATCTGCAGGATTTTCCAGAAGAGTAATTGTGGGAAGAAAATGCCCATTTCTAGGTTGTTGAGGTTCAGCACTTTTGCAAAGGACATACCTTCATTGATGGATTCTTCTCCAAACAACAACAACAACAGTGAATCAAAACCTGTTTTGGGGGAGTCATCACATGCAACCTGCTTCTCTGATCCAAACCAAAGTGAGGATAAAAAAACAGAAAACGAAAACATAGCTGAAAGCTATGAAATCATCATGTTGGCATCTTCATATTCTTCAAACCCCTCTGATGTTTCCCCTGACTCATGGACTTTTTCCAAATCTGCCCCTACTGTGTCCCACCAATCACTCCAAGTTGGAAACTCACACTGCTCAGATTACTTCATGCTTCATCAGGAACAGTCCATGTTGGGGATGTTGATTGAAAACCATGGATCAAGTACTGGCCAAAGAACTCAGAAAGCTCAGGATAATAATAAAGACTTTGATGCTGACATGTCCTCGGTGATGTACAACAACAATGAAATGTTTCAAAGATCATTTGGGAACCAGGAATATTCATCACCTTCTGTAGGACATGTGTATTCTAGTGGCCTATGGGGATTTTAA 1089 0.416 MQAMENNNYQREIMEEQRFELPPGFRFHPTDEELITHYLSQKVLDSCFCARAIGEADLNKCEPWDLPCMAKMGEKEWYFFCVRDRKYPTGQRTNRATGAGYWKATGKDREIYKAKTLIGMKKTLVFYKGRAPSGEKSNWVMHEYRLENEHSVQNPPKKAMNDWAICRIFQKSNCGKKMPISRLLRFSTFAKDIPSLMDSSPNNNNNSESKPVLGESSHATCFSDPNQSEDKKTENENIAESYEIIMLASSYSSNPSDVSPDSWTFSKSAPTVSHQSLQVGNSHCSDYFMLHQEQSMLGMLIENHGSSTGQRTQKAQDNNKDFDADMSSVMYNNNEMFQRSFGNQEYSSPSVGHVYSSGLWGF* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0213 362 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 327 - -
Gso19g0213 362 Pfam No apical meristem (NAM) protein 22 146 IPR003441 GO:0003677|GO:0006355
Gso19g0213 362 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
Gso19g0213 362 SUPERFAMILY NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
Gso19g0213 362 MobiDBLite consensus disorder prediction 195 224 - -
Gso19g0213 362 MobiDBLite consensus disorder prediction 195 235 - -
Gso19g0213 362 PANTHER NAC DOMAIN-CONTAINING PROTEIN 92-LIKE 14 327 - -
Gso19g0213 362 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0213 Gso-Chr19 2902512 2904714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0213 20 362 NAC Transcription Factor Family AT5G07680 50.144 1.69e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso19g0213 NAM 7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0213 - - gmx:100785620 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0213 19 2902512 2904714 Gso19g0213 19 2902512 2904714 ECH