Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0210 ATGTGCAACTTCATGAAAAAAATGGTTCATCTTGGCTTCTTCCTTCTGGGGTGTCTCTCCATGATCTCATATGCTAATGGTTATGTCAGCAATGGGGGTTGGACCAATGCCCATGCTACATTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAACTTGTATAGTCAAGGATATGGGACTAACACAGCAGCACTTAGCACTGCCTTGTTCAACAATGGCTTGAGTTGTGGCTCATGCTACCAAATCAAATGTGCAAATGACCCACAATGGTGCCTCCGTGGCACCATTGTAGTCACTGCCACTAATTTCTGCCCCCCTGGTGGATGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTGTTTCAGCAAATTGCCCAATACAGAGCTGGTATTGTGCCTGTAGTTTACAGAAGGGTACGGTGCATGAGAAGAGGTGGAATCAGGTTCACCATCAATGGTCATTCATACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATTCTGTGGCCATAAAAGGTTCAAGAACCAGATGGCAACCCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAACTCCTACCTTAATGGACAGAGTCTTTCCTTTTTGGTCACCACTAGTGATGGTCGCAGTGTGCTCTCATACAATGCTGCACCACCAAGTTGGTCCTTTGGACAGACCTACACTGGAAGGCAATTCCGCTACTAA 753 0.4661 MCNFMKKMVHLGFFLLGCLSMISYANGYVSNGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYQIKCANDPQWCLRGTIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYRAGIVPVVYRRVRCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSVLSYNAAPPSWSFGQTYTGRQFRY* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0210 250 SMART dpbb_1 69 146 IPR007112 -
Gso19g0210 250 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Gso19g0210 250 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Gso19g0210 250 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Gso19g0210 250 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Gso19g0210 250 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Gso19g0210 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Gso19g0210 250 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Gso19g0210 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 156 IPR007112 -
Gso19g0210 250 Gene3D - 22 151 IPR036908 -
Gso19g0210 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Gso19g0210 250 PANTHER EXPANSIN 10 249 - -
Gso19g0210 250 Gene3D - 156 248 IPR036749 -
Gso19g0210 250 Pfam Lytic transglycolase 69 146 IPR009009 -
Gso19g0210 250 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Gso19g0210 250 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Gso19g0210 250 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Gso19g0210 250 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Gso19g0210 250 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Gso19g0210 250 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Gso19g0210 250 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Gso19g0210 250 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Gso19g0210 250 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Gso19g0210 250 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Gso19g0210 250 PANTHER EXPANSIN-A15 10 249 IPR002963 GO:0009664
Gso19g0210 250 SUPERFAMILY Barwin-like endoglucanases 33 174 IPR036908 -
Gso19g0210 250 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0210 Gso-Chr19 2782909 2785373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0210 4 249 Expansin Gene Family AT2G03090 77.165 8.76e-142 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0210 - K20628 gmx:100799370 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0210 19 2782909 2785373 Gso6g1641 6 17441892 17444849 ECH
Gso19g0210 19 2782909 2785373 Gso19g0210 19 2782909 2785373 ECH
Gso2g0916 2 10475760 10478094 Gso19g0210 19 2782909 2785373 ECH