Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0202 ATGGCTGCAATATCATGTTCCTATGTATTCACCTATGATGTGTTCCTTAGCTTCAGAGGCTCAGACACACGCCATGGTTTTGTTGGCAATCTCTACAAAGCTCTTAATGACAAGGGAATCCACACTTTCATTGATGATGAGAAGCTTCAGGGAGGAGAGGAAATAACACCAACACTTATGAAAGCAATTGAGGAGTCCCAGATTGCCATCACTGTGCTCTCTCACAACTATGCTTCTTCCTCATTTTGTTTGGATGAACTTGTTCACATCATTGATTGTAAGAGGAAAGGTTTGCTGGTTTTGCCGGTTTTTTATAACTTGGATCCTTCTGATGTGAGACACCAGAAAGGTAGTTATGGAGAAGCATTGGCTAGGCATGAGGAAAGGTTCAAAGCTAAGAAGGAGAGGTTGAACCAAAACATGGAGAGGTTGGAGAAATGGAAGATGGCTTTGCATCAAGTAGCTAATTTGTCTGGATATCATTTCAAACAAGGAGATGGATATGAATATGAGTTTATTGGGAAGATTGTTGAAATGGTTTCTGGCAAGACTAACCGGGCTCTTTTACATATTGCGGATTATCCGGTTGGGCTAGAGTCACAAGTATTAGAAGTAGTGAAACTTTTGGATGTTGGAGCTAATGATGGTGTCCACATGATAGGGATCCATGGAATTGGTGGGATAGGAAAAACAACACTTGCTCTAGCAGTTTATAATTATGTTGCTGACCATTTTGATGGTTCGTGTTTTCTTGAAAACGTGAGAGAAAATTCAGACAAACATGGGTTACAACATCTCCAAAGCATCATTCTTTCTGAATTGGTTAAAGAAAATAAAATGAACATAGCAACTGTGAAACAAGGAATTTCAATGATACAACATAGGCTCCAGCGAAAAAAGGTTCTCTTGATTGTAGATGATGTTGATAAGCCTGAGCAATTGCAGGCTATTGTTGGAAGACCTGATTGGTTTGGTTCTGGCAGTAGAATCATCATCACGACGCGCGACGAAAAACTGCTGGCATCTCATGAGGTTAGAAGAACATATGAGGTGAATGAATTGAACAGGAATGATGCTCTTCAATTGCTCACATGGGAAGCTTTTAAAATGCAAAAAGTTGATCCAAGTTATGAGGAGATGTTGAATCGTGTGGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGAAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTATACAAGAATGGAAATCTGCTATCAATCAATACCAAAGAATTCCTAATAACCAAATCTTAAAGATACTCAAAGTAAGTTTTGATGCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATGTGAATTGGAAGAGGTTGAAGATATACTTCATGCTCATTATGGAGACTGCATGAAATATCATATTGGGGTGCTGATTGATAAATCCCTCTTAAAGCTTAGTGTGCATGGTACAATGGTGACATTGCATGACTTGATAGAGGACATGGGTAGAGAAATTGTACGACAGGAGTCACCAAAAGATCCAGGGAAGCGCAGTAGATTATGGTTCCATGAGGATATAATTCAAGTTTTAGAAGATAACACAGGAACAAGTGAAATTGAAATCATATGTCTGAATTTCCCCTTACTTGACAAAGAAGATATAGTAGAATGGAACAGAAAGGCCTTCAAGAAGATGAAAAACCTCAAAACTCTGATTATTAAAAGTGGTCATTTTTGCAAAGGTCCCAGGTATCTTCCAAATAGTCTAAGAGTATTGGAATGGTGGAGATATCCTTCACATGATTTACCATCTGATTTTCGTTCAAAGAAACTTGGCATATGCAAGTTACCCCATTGTTGTTTTACATCACTTGAGTTGGTTGGCTTTTTAACGAAATTTATGAGTATGAGAGTTTTGAATTTGGACAAATGCAAATGTTTAACACAGATACCTGATGTATCTGGTCTCCCAAATTTAGAAAAACTTTCATTTCAACACTGTCAAAATTTAACTACAATTCACAGTTCAATTGGATTTCTATATAAACTTAAAATATTGAGTGCTTTTGGTTGCACCAAGCTTGTGAGTTTTCCACCCATCAAGTTGACCTCTCTTGAAAAACTCAATCTCTCGCGTTGTCATAGTCTTGAGAGTTTTCCAGAAATATTAGGAAAGATGGAAAACATAAGGGAACTTCAGTGTGAATACACTTCCATAAAAGAATTGCCATCTTCAATTCATAATCTTACCCGACTTCAAGAATTACAACTGGCTAACTGTGGAGTTGTTCAGTTACCAAGTAGCATTGTAATGATGCCAGAACTTACTGAACTTATTGGTTGGAAATGGAAAGGGTGGCAATGGCTAAAACAGGAAGAGGGTGAAGAAAAATTTGGATCATCAATAGTATCTTCAAAGGTAGAATTGCTTTGGGCCTCAGATTGCAACCTGTATGATGATTTCTTTTCAATAGGTTTCACGCGGTTTGCTCATGTGAAAGATTTAAACCTATCAAAGAATAATTTCACAATGCTTCCTGAATGCATCAAAGAATTTCAGTTTTTAAGGAAGCTTAATGTGAATGACTGCAAGCATCTTCAGGAAATTAGAGGCATTCCACCTAGCTTAAAACATTTCTTAGCAACAAACTGTAAATCCTTGACTTCCTCAAGTACAAGCATGTTCCTGAATCAGGAACTGCATGAGACTGGAAAAACTCAGTTTTATTTGCCAGGAGAAAGGATTCCAGAGTGGTTTGATCACCAAAGTAGGGGACCTTCAATTTCTTTCTGGTTTCGCAATAAGTTCCCCGGCAAAGTTCTTTGTCTTGTTATTGGACCTATGGATGATGACTCTGGAATGTTAATATCTAAGGTGATCATCAATGGCAATAAATATTTCCGTGGTAGTGGTTATTTCATGATGGGAATGGATCATACATATCTTTTTGATCTTCAAATAATGGAATTTGAAGATAATTTGTATGTACCTTTAGAAAATGAATGGAACCATGCGGAGGTTACATATGAGGGTTTGGAAGAGACCTCAACCCCTAAAGAATGCGGAATCCATGTATTCAAACAGGAAAGTAGCATGAAGGATATTCGATTTGCTGATCCTTATGGCAAGAGAAAATTAGGCAATGATCGCAACAGTTTGGAATCACAAAACCAACAATTGCTAAAAAAACATAGGTTTGTGGACATGGAAGTTTCATAG 3222 0.3762 MAAISCSYVFTYDVFLSFRGSDTRHGFVGNLYKALNDKGIHTFIDDEKLQGGEEITPTLMKAIEESQIAITVLSHNYASSSFCLDELVHIIDCKRKGLLVLPVFYNLDPSDVRHQKGSYGEALARHEERFKAKKERLNQNMERLEKWKMALHQVANLSGYHFKQGDGYEYEFIGKIVEMVSGKTNRALLHIADYPVGLESQVLEVVKLLDVGANDGVHMIGIHGIGGIGKTTLALAVYNYVADHFDGSCFLENVRENSDKHGLQHLQSIILSELVKENKMNIATVKQGISMIQHRLQRKKVLLIVDDVDKPEQLQAIVGRPDWFGSGSRIIITTRDEKLLASHEVRRTYEVNELNRNDALQLLTWEAFKMQKVDPSYEEMLNRVVTYASGLPLALKVIGSNLFGKSIQEWKSAINQYQRIPNNQILKILKVSFDALEEEEKSVFLDIACCFKGCELEEVEDILHAHYGDCMKYHIGVLIDKSLLKLSVHGTMVTLHDLIEDMGREIVRQESPKDPGKRSRLWFHEDIIQVLEDNTGTSEIEIICLNFPLLDKEDIVEWNRKAFKKMKNLKTLIIKSGHFCKGPRYLPNSLRVLEWWRYPSHDLPSDFRSKKLGICKLPHCCFTSLELVGFLTKFMSMRVLNLDKCKCLTQIPDVSGLPNLEKLSFQHCQNLTTIHSSIGFLYKLKILSAFGCTKLVSFPPIKLTSLEKLNLSRCHSLESFPEILGKMENIRELQCEYTSIKELPSSIHNLTRLQELQLANCGVVQLPSSIVMMPELTELIGWKWKGWQWLKQEEGEEKFGSSIVSSKVELLWASDCNLYDDFFSIGFTRFAHVKDLNLSKNNFTMLPECIKEFQFLRKLNVNDCKHLQEIRGIPPSLKHFLATNCKSLTSSSTSMFLNQELHETGKTQFYLPGERIPEWFDHQSRGPSISFWFRNKFPGKVLCLVIGPMDDDSGMLISKVIINGNKYFRGSGYFMMGMDHTYLFDLQIMEFEDNLYVPLENEWNHAEVTYEGLEETSTPKECGIHVFKQESSMKDIRFADPYGKRKLGNDRNSLESQNQQLLKKHRFVDMEVS* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0202 1073 Pfam C-JID domain 911 1027 IPR045344 -
Gso19g0202 1073 SMART till_3 11 157 IPR000157 GO:0007165
Gso19g0202 1073 Gene3D - 7 188 IPR035897 -
Gso19g0202 1073 PRINTS Disease resistance protein signature 219 234 - -
Gso19g0202 1073 PRINTS Disease resistance protein signature 295 309 - -
Gso19g0202 1073 PRINTS Disease resistance protein signature 388 402 - -
Gso19g0202 1073 PRINTS Disease resistance protein signature 701 717 - -
Gso19g0202 1073 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 923 IPR044974 GO:0006952
Gso19g0202 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 447 IPR027417 -
Gso19g0202 1073 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 160 IPR035897 -
Gso19g0202 1073 Gene3D Ribonuclease Inhibitor 795 919 IPR032675 -
Gso19g0202 1073 Gene3D Ribonuclease Inhibitor 535 785 IPR032675 -
Gso19g0202 1073 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 923 - -
Gso19g0202 1073 ProSiteProfiles TIR domain profile. 10 184 IPR000157 GO:0007165
Gso19g0202 1073 SUPERFAMILY "Winged helix" DNA-binding domain 424 532 IPR036390 -
Gso19g0202 1073 Gene3D - 189 348 IPR027417 -
Gso19g0202 1073 Gene3D - 353 437 IPR042197 -
Gso19g0202 1073 Coils Coil 123 147 - -
Gso19g0202 1073 Pfam TIR domain 12 185 IPR000157 GO:0007165
Gso19g0202 1073 SUPERFAMILY L domain-like 509 894 - -
Gso19g0202 1073 Pfam NB-ARC domain 200 423 IPR002182 GO:0043531
Gso19g0202 1073 Coils Coil 1044 1064 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0202 Gso-Chr19 2601890 2606351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0202 12 779 WRKY Transcription Factor Family AT4G12020 32.116 1.66e-80 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0202 - - gmx:100780257 2164.42