Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0199 ATGGAGATAATAACACCAGTACCAGCAACAGCAACAACAACAGCCAAAAACGCAACCGCGAAATCGCCAGAACCCGACGTAGAGACGCCGACCCGGATCCACCAAAACCCGAACCTGAATCCAAAGCCGGTGTCTTTCTCCAACGGCGTCTTGAAGCGCCACCATGCAAACCACCGCCCCAACGCGGTGGTTTACAAGGAATGCTTGAAGAACCACGTGGCGAGCTTGGGTGGCCACGCTTTGGACGGCTGCGGCGAGTTCATGCCGTCGCCGGCGGCCACCGCCGACGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCGCCGCGAACCGGAGGAGACACCCATTTCTCCGGCGACGCACCATGTTCTAGAGTACCAGCCCCACCACCGCCATCACCCTCCTCCGCCGGCCCCGTCGCACCGGAGTCCGAACTCCGCCTCCCCGCCGCCGATCTCCTCCTACCCCTCCGCCCCCCACATGCTCCTCGCCCTCTCCGGCGGCGGTGGCTTCTCCGTCGCGCGGGAAAACACCGGCGCGCCGGCGCCGGCGCACAACCACTCGCGTAAACGCTTCCGAACGAAGTTCACCCAAGAACAAAAGGAGAAGATGCATGAGTTCGCCGACAAAGTTGGGTGGAAGATGCAGAAGCGCGACGATGAAATGGTTATGGAGTTCTGCAACGAGATTGGCGTCGAAAGAGGGGTTCTCAAAGTGTGGATGCACAACAACAAGAACACTCTCGCGAAAAAAGACAACCTTAACAACGGTAACGGTAGCACTCTGAGTGTCAGCGCCAACGGGATTTCTCTGGATGGCGCTGTTGGGAGTGCCACCGTTAGAACCGGTGTTCATGTCCCCGAACATGGACATGAACACAGCGGAATTAATGGTAACGGTAGCGGCGACAACAACCACAACCACAATCTCGCTTCCCATGATGTGAACGAGTACGAGAATGATAGTGGGACTAACGGGGGTGGTACTAATGGGTCTTCTTCTTCTTCTTGA 1029 0.5831 MEIITPVPATATTTAKNATAKSPEPDVETPTRIHQNPNLNPKPVSFSNGVLKRHHANHRPNAVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEETPISPATHHVLEYQPHHRHHPPPPAPSHRSPNSASPPPISSYPSAPHMLLALSGGGGFSVARENTGAPAPAHNHSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDDEMVMEFCNEIGVERGVLKVWMHNNKNTLAKKDNLNNGNGSTLSVSANGISLDGAVGSATVRTGVHVPEHGHEHSGINGNGSGDNNHNHNLASHDVNEYENDSGTNGGGTNGSSSSS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0199 342 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 4 279 - -
Gso19g0199 342 MobiDBLite consensus disorder prediction 1 42 - -
Gso19g0199 342 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 195 252 IPR006455 -
Gso19g0199 342 Pfam ZF-HD protein dimerisation region 63 117 IPR006456 -
Gso19g0199 342 Gene3D - 180 257 - -
Gso19g0199 342 MobiDBLite consensus disorder prediction 133 165 - -
Gso19g0199 342 MobiDBLite consensus disorder prediction 322 342 - -
Gso19g0199 342 MobiDBLite consensus disorder prediction 293 342 - -
Gso19g0199 342 SUPERFAMILY Homeodomain-like 184 256 IPR009057 -
Gso19g0199 342 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 65 116 IPR006456 -
Gso19g0199 342 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 116 IPR006456 -
Gso19g0199 342 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 279 - -
Gso19g0199 342 MobiDBLite consensus disorder prediction 144 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0199 Gso-Chr19 2541489 2543122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0199 9 251 ZF-HD Transcription Factor Family AT5G15210 52.590 2.53e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso19g0199 ZF-HD_dimer 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0199 - - gmx:100814730 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0430 13 16106839 16108453 Gso19g0199 19 2541489 2543122 GST
Gso19g0199 19 2541489 2543122 Gso18g2115 18 54176516 54178158 PCT
Gso19g0199 19 2541489 2543122 Gso9g1957 9 43936106 43937725 PCT
Gso18g2115 18 54176516 54178158 Gso19g0199 19 2541489 2543122 PCT
Gso9g1957 9 43936106 43937725 Gso19g0199 19 2541489 2543122 PCT