Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0198 ATGAGGAAGCGCCAAGTGGTTGTGAGAAGAGAGGAGCCTCAGAGGAGTGGCGTTAGGGCGGTGAAATACGGCGAGTGCCAGAAGAATCACGCCGCGAATGTGGGAGGGTATGCTGTTGATGGCTGCAGGGAGTTCATGGCAAGTGGCAGTGGCAGCGGCGGCGGCAGCGGCGGCGGAGAAGGAACAAGTGCTGCTCTCACTTGTGCCGCGTGTGGCTGCCACAGGAACTTCCACAAGAGACAGGAAGCTGAAGTGGTGAGTGAGTGCTCCTCGCCTACCTCCAATGGAACTTGA 294 0.5884 MRKRQVVVRREEPQRSGVRAVKYGECQKNHAANVGGYAVDGCREFMASGSGSGGGSGGGEGTSAALTCAACGCHRNFHKRQEAEVVSECSSPTSNGT* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0198 97 PANTHER MINI ZINC FINGER PROTEIN 2 17 91 - -
Gso19g0198 97 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 22 81 IPR006456 -
Gso19g0198 97 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 81 IPR006456 -
Gso19g0198 97 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 91 - -
Gso19g0198 97 Pfam ZF-HD protein dimerisation region 21 82 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0198 Gso-Chr19 2515712 2516889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0198 1 96 Zinc finger-homeobox gene family AT3G28917 61.682 2.55e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso19g0198 ZF-HD_dimer 5.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0198 - - gmx:100799188 177.948