Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0197 ATGGGAAGGCCACCATGTTGTGATAAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGACATCATTTTGGTGTCTTATATTCAGGAACATGGTCCTGGCAATTGGAAAGCTGTTCCTGCCAATACTGGGTTGTCAAGGTGCAGTAAGAGTTGTAGACTTAGATGGACTAATTACCTGAGGCCAGGAATCAAAAGGGGTAACTTCACAGACCAAGAGGAGAAGATGATTATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCAATAGCTGCTTACCTACCACAAAGAACAGATAATGACATAAAAAACTATTGGAACACATATTTGAAAAAGAAGCTGAACAAAAAATTGGAAGCAGGTTCTGATCAAGGAAGCTTGTTGGGAGGAGGACATAATAATATTGGGTTTTCATCAGTTTCTCAACCAATGTCTAGAGGCCAGTGGGAAAGAAGGCTTCAAACAGATATTCACATGGCCAAAAAAGCACTTAGTGAAGCACTCTCACCAAACAAGGCATCATCATCATCATCAACCTTGTTAGCTGAATCAAATTCAAACCTCTCCAATGAAAATAGTACCTTCTATAATAGTAACACTAATAAACCAACAACAACACAATCTATGTGCTATGCTTCAAGTGCTGATAACATAGCTCGTTTGTTGAAAGGGTGGATGAAAAACACACCAAAATCAGCCTCATGTGCTGCCTCGGCTGTGACTCAAAATTCCTGTTCTTCTAGTGAAGGAATTACAACAACAAAGGGAAGCACAACAAGCACTAGTACTGTTGAATTGTCTGAGACTTTTGAGTCCTTGTTTGGTTATGAGTCTTTCGATAATTACTCTTCAAATTCTGAGTTCTCACCATCTCTTTCTCCTGAGGCTACTCTTTTCCAAGATGAGGGCAAGCCAGATATAACTACAGGATTAATAGACATGCCTTTCTCTTTGTTTGAGAAATGGCTTCTAGATGTTGATGCTGGTAGTCAAGAGAAACTTGGCTTCTAG 1014 0.4014 MGRPPCCDKGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPANTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKKLEAGSDQGSLLGGGHNNIGFSSVSQPMSRGQWERRLQTDIHMAKKALSEALSPNKASSSSSTLLAESNSNLSNENSTFYNSNTNKPTTTQSMCYASSADNIARLLKGWMKNTPKSASCAASAVTQNSCSSSEGITTTKGSTTSTSTVELSETFESLFGYESFDNYSSNSEFSPSLSPEATLFQDEGKPDITTGLIDMPFSLFEKWLLDVDAGSQEKLGF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0197 337 Gene3D - 68 127 - -
Gso19g0197 337 Gene3D - 12 65 - -
Gso19g0197 337 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gso19g0197 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Gso19g0197 337 SMART sant 12 62 IPR001005 -
Gso19g0197 337 SMART sant 65 113 IPR001005 -
Gso19g0197 337 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gso19g0197 337 CDD SANT 15 60 IPR001005 -
Gso19g0197 337 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gso19g0197 337 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Gso19g0197 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Gso19g0197 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 334 - -
Gso19g0197 337 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Gso19g0197 337 CDD SANT 68 110 IPR001005 -
Gso19g0197 337 MobiDBLite consensus disorder prediction 166 185 - -
Gso19g0197 337 MobiDBLite consensus disorder prediction 169 185 - -
Gso19g0197 337 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0197 Gso-Chr19 2488068 2490148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0197 1 337 MYB Transcription Factor Family AT5G62470 51.507 1.25e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g0197 Myb_DNA-binding 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0197 K09422 - gmx:778078 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0432 13 16165716 16167567 Gso19g0197 19 2488068 2490148 GST
Gso19g0197 19 2488068 2490148 Gso18g2114 18 54143076 54145246 PCT
Gso19g0197 19 2488068 2490148 Gso9g1958 9 43969741 43971687 PCT
Gso18g2114 18 54143076 54145246 Gso19g0197 19 2488068 2490148 PCT
Gso9g1958 9 43969741 43971687 Gso19g0197 19 2488068 2490148 PCT