Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0195 ATGGAGGAGAGGAATGAGATGGAAAGAATTGATGATGTGATGCCAGGATTTCGTTTTCACCCCACTGATGAAGAGCTTGTTGATTTTTATCTCAAGAGAAAAATTCAGCAGAAGTCTCTTCCTATTGAACTCATTAAGCAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAAGCTGGCAGGTACTGGGGAGAAAGAGTGGTATTTCTACTGTCCAAGGGACAGAAAATACAGGAACAGTGCACGTCCAAATAGAGTCACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGACAGGCCTATATATTCCTCTGAAGGAAAGTGCATTGGTTTGAAGAAGTCTCTTGTGTTCTACAGAGGAAGAGCTGCTAAAGGAATGAAAACTGACTGGATGATGCATGAGTTTAGGCTTCCTTGCATATCAGACTCATCCCCTCCCAAAAAACTCTCTGACAAAAGCCTCCCTCCAAGTGATTCATGGGCAATTTGTAGGATATTCAAGAAAGCCAATTCCTTCTCCATGGCACAAAAAGCATTATCTCTCCCTTGGATCTCTCAGTTACCTGGAGGCATGGTATCTGACATGTTCACACAAGGTTTAAACTGCCATAACATAGAATCACCAGCCATTCAATTTTGTGGTGACAAGCAGGATGAGTTACACCAAGTCTCCAACAATGCCATCAACACCAACTTCACAGCCTCAGATATTCCCACTTACAAGCCCATCAACAACAGCACAGCTTCCAAAAGTCCTGTTTCAGATGGAGACCTTGCTGCTGACAACTTCATATTCTACACAGGGCCCACCAAGTGCTGCAGCACACTACTTGATGCCACTAATTCCATGCTTTCTCATCCCAACCCTGACTACATAGCATTTGAAGAGCCAAACCAACAACATTATAGTGGCTTCTCAATCAATCTACCTCAAGATATGCAACAAAACATGAGCACAGAAACAGGAACCACTGGATTTCCCTTCAGTTTGAGTCCTCCTTATGATGCTGCTTGGAAGGCTTCTTCTGTGGCATGGGATTCACCTCCTTGCCCTAGTGACATGTCCACTACCTATTCCACTAATAAATGCTACACTTAA 1104 0.4348 MEERNEMERIDDVMPGFRFHPTDEELVDFYLKRKIQQKSLPIELIKQVDIYKYDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISDSSPPKKLSDKSLPPSDSWAICRIFKKANSFSMAQKALSLPWISQLPGGMVSDMFTQGLNCHNIESPAIQFCGDKQDELHQVSNNAINTNFTASDIPTYKPINNSTASKSPVSDGDLAADNFIFYTGPTKCCSTLLDATNSMLSHPNPDYIAFEEPNQQHYSGFSINLPQDMQQNMSTETGTTGFPFSLSPPYDAAWKASSVAWDSPPCPSDMSTTYSTNKCYT* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0195 367 Gene3D NAC domain 22 175 IPR036093 GO:0003677|GO:0006355
Gso19g0195 367 ProSiteProfiles NAC domain profile. 13 170 IPR003441 GO:0003677|GO:0006355
Gso19g0195 367 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 365 - -
Gso19g0195 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 1 365 - -
Gso19g0195 367 SUPERFAMILY NAC domain 11 170 IPR036093 GO:0003677|GO:0006355
Gso19g0195 367 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0195 Gso-Chr19 2451951 2455250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0195 2 186 NAC Transcription Factor Family AT5G39820 69.000 3.46e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso19g0195 NAM 2.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0195 - - gmx:100778120 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0195 19 2451951 2455250 Gso19g0195 19 2451951 2455250 ECH
Gso13g0433 13 16191497 16194832 Gso19g0195 19 2451951 2455250 GST