Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0189 ATGGCTGAAGCTGCTGAGCCTAATAAAGCATTGCCTGAGGCAGAGAAGAAGAAGGAGCAGACACTACCCTTTTACAAGCTCTTCTCATTTGCAGACAAGTGTGATTGGATGCTCATGATCTCTGGCAGCATAGGAGCTATTATTCATGGCTCATCCATGCCGGTTTTCTTCCTCCTCTTTGGTGAAATGGTTAATGGCTTTGGCAAAAACCAAATGAACTTGAAGAAAATGACAGAAGAAGTATCAAAGTATGCTCTCTATTTCGTGTACCTTGGCCTTGTCGTTTGCATATCATCCTATGCAGAAATTGCATGCTGGATGTACACTGGGGAGAGGCAAGTGAGCACACTGAGAAAGAAGTACTTGGAGGCAGTGCTTAAACAAGACGTTGGTTTCTTTGACACGGATGCAAGAACAGGAGATATTGTTTTCAGTGTTTCCACAGATACTCTTCTAGTTCAAGACGCTATAAGCGAGAAGGTGGGGAACTTCATACACTATCTATCAACGTTTCTGGCTGGTCTAGTGGTTGGTTTTGTTTCAGCATGGAGGCTTGCACTTCTGAGTGTTGCAGTGATTCCTGGGATTGCCTTTGCTGGTGGATTGTATGCTTACACACTCACTGGCCTCACATCGAAGAGTCGAGAATCTTATGCGAATGCTGGCATCATCGCCGAGCAGGCAATTGCTCAAGTTAGAACAGTTTACTCTTATGTTGGTGAGAGCAAGGCATTGAATTCTTATTCCGATGCAATACAAAACACATTGAAGCTTGGATACAAGGCAGGGATGGCCAAAGGTTTAGGCCTGGGATGCACATATGGAATAGCTTGCATGTCTTGGGCACTAGTTTTCTGGTATGCTGGAGTTTTCATCAGAAATGGACAAACAGATGGTGGCAAGGCGTTCACCGCTATTTTCTCGGCCATTGTTGGTGGCATGAGTTTGGGACAGTCATTTTCGAACTTAGGCGCTTTCAGCAAAGGCAAAGCTGCTGGATACAAATTGATGGAAATCATCAATCAGAAACCAACCATAGTGGAAGATCCATCGGAAGGAAAGTGCTTAGCTGAGGTTAATGGCAACATTGAATTTAAGGATGTCACTTTCAGCTACCCTTCGAGGCCGGATATGTTTATCTTTCGCAATTTCTCAATCTTTTTCCCTGCTGGTAAAACTGTTGCAGTTGTTGGTGGTAGTGGATCTGGAAAAAGCACAGTTGTTTCCTTGATAGAAAGGTTCTACGATCCAAATGAAGGTCAGGTTCTGCTGGATAATGTGGACATTAAGACACTACAACTAAAATGGTTACGTGATCAAATTGGGTTGGTGAATCAAGAACCTGCACTCTTTGCAACTACCATTCTTGAGAATATACTCTATGGAAAACCTGATGCAACAATGGCTGAAGTGGAGGCTGCTACTTCTGCTGCAAATGCTCATAGCTTTATTACCTTACTTCCTAATGGCTATAACACTCAGGTAGGAGAGCGAGGAGTTCAATTATCTGGGGGCCAAAAGCAGAGAATTGCTATTGCTAGAGCTATGTTGAAAAATCCAAAAATCCTTCTATTAGATGAAGCTACTAGTGCTCTTGATGCAGGGTCTGAAAACATTGTTCAAGAGGCACTAGACAGGCTCATGGTTGGAAGAACAACCGTGGTTGTTGCACATCGTCTATCAACCATAAGGAATGTTGATACCATTGCAGTTATACAACAAGGCCAAGTTGTTGAGACAGGCGCACATGAAGAACTCATTGCCAAGGCAGGCACCTATGCCTCACTCATTCGGTTCCAAGAAATGGTTGGAAATAGGGACTTCTCCAACCCATCAACTCGCCGGACACGGTCATCTCGCTTGAGCCATTCATTGTCAACCAAGTCCTTAAGCCTCCGGTCTGGAAGCTTGAGGAACTTGAGCTACCAGTATAGCACCGGAGCCGATGGCCGCATTGAGATGATATCAAATGCTGAAACAGACAAGAAAAATCCTGCCCCAGATGGATATTTCTTCAGGTTGCTCAAGATGAATGCTCCTGAATGGCCTTACTCAATCATGGGAGCTGTTGGTTCTGTTCTTTCTGGATTCATTGGCCCAACTTTTGCTATTGTTATGAGCAACATGATTGAGGTCTTTTACTTCAGTAATTATGCATCCATGGAGAGGAAGACTAAGGAGTATGTCTTCATTTACATTGGTGCTGGTCTCTATGCTGTTGGTGCATACTTGATACAACATTACTTCTTTAGTATCATGGGAGAAAACCTCACCACAAGGGTCAGAAGAATGATGCTTGCCGCTATTTTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCAAGCCTTGTTGCAGCTCGCCTTGCCACAGATGCAGCTGATGTCAAGTCTGCCATTGCTGAGAGGATATCAGTGATTCTACAGAACATGACATCTCTCCTTACTTCTTTCATAGTTGCTTTCATAGTTGAATGGAGGGTTTCCTTGCTCATCTTGGCAACTTTCCCTCTCCTTGTTCTAGCCAATTTTGCTCAGCAACTATCTCTAAAAGGGTTTGCTGGAGACACAGCCAAGGCTCATGCAAAGACAAGTATGATAGCAGGAGAGGGAGTGAGCAACATCAGAACAGTTGCAGCATTCAATGCTCAGAACAAGATGTTATCGGTGTTCTGCCACGAGCTCCGAGTGCCTCAGAGCCAGAGCCTGCGCCGGAGCCTGACATCCGGCTTCTTGTTCGGTCTCTCTCAGCTTGCCCTCTATGCCTCCGAGGCTCTCATTCTATGGTATGGTGCACATTTGGTCAGCAAAGGTGTTTCAACCTTCTCAAAGGTCATCAAGGTGTTTGTGGTCCTAGTGATCACTGCGAATTCGGTGGCTGAAACCGTGAGCCTTGCACCGGAGATTATTCGCGGTGGCGAAGCTGTTGGTTCAGTGTTCTCAATCCTCGATCGATCAACAAGAATTGACCCTGATGATCCTGATGCTGATCCGGTTGAATCGCTTCGCGGGGAAATTGAGCTCAGACATGTTGATTTTGCATACCCTTCTAGGCCTGATGTGATGGTGTTCAAGGATTTTAACCTTAGGATCCGTGCAGGCCAGAGTCAGGCTCTTGTGGGGGCAAGTGGTTCGGGGAAGAGTTCTGTTATTGCATTGATTGAGAGATTCTATGACCCTATTGCTGGAAAAGTGATGGTGGATGGAAAGGACATTAGGAAGTTGAACTTGAAGTCTTTGAGGCTTAAAATTGGGTTGGTGCAGCAAGAGCCAGCACTTTTTGCAGCAAGCATTTTCGAGAACATTGCATATGGGAAAGAAGGTGCAACCGAGGCTGAGGTGATTGAGGCCGCGCGTGCTGCGAACGTGCACGGATTTGTGAGTGGTTTGCCTGAAGGTTACAAGACACCGGTTGGCGAGAGAGGCGTGCAACTCTCTGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGAGCCGTGCTTAAGGACCCCACAATTCTTCTACTAGATGAGGCCACAAGTGCACTTGATGCTGAGTCCGAGTGTGTGCTACAAGAGGCCTTGGAGAGGCTAATGAGGGGTCGCACCACGGTGCTCGTGGCTCATCGTTTGTCAACCATTAGAGGGGTTGATTGCATTGGTGTGGTTCAAGATGGGCGCATTGTGGAGCAAGGTAGCCATTCTGAACTTGTCAGCAGGCATGAGGGGGCATATTCTAGACTCTTGCAGCTACAACATCATCACATATGA 3753 0.4594 MAEAAEPNKALPEAEKKKEQTLPFYKLFSFADKCDWMLMISGSIGAIIHGSSMPVFFLLFGEMVNGFGKNQMNLKKMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPTIVEDPSEGKCLAEVNGNIEFKDVTFSYPSRPDMFIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGAHEELIAKAGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKMNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFSNYASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSVFCHELRVPQSQSLRRSLTSGFLFGLSQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDADPVESLRGEIELRHVDFAYPSRPDVMVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFENIAYGKEGATEAEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRHEGAYSRLLQLQHHHI* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0189 1250 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Gso19g0189 1250 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Gso19g0189 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 1248 IPR039421 -
Gso19g0189 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 600 IPR027417 -
Gso19g0189 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Gso19g0189 1250 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 1248 - -
Gso19g0189 1250 SMART AAA_5 390 576 IPR003593 -
Gso19g0189 1250 SMART AAA_5 1035 1221 IPR003593 -
Gso19g0189 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Gso19g0189 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Gso19g0189 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524
Gso19g0189 1250 Pfam ABC transporter transmembrane region 44 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g0189 1250 Pfam ABC transporter transmembrane region 686 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g0189 1250 Pfam ABC transporter 382 530 IPR003439 GO:0005524
Gso19g0189 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Gso19g0189 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g0189 1250 Gene3D ABC transporter type 1, transmembrane domain 86 982 IPR036640 GO:0005524|GO:0016021
Gso19g0189 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Gso19g0189 1250 SUPERFAMILY ABC transporter transmembrane region 667 992 IPR036640 GO:0005524|GO:0016021
Gso19g0189 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g0189 1250 Gene3D - 998 1249 IPR027417 -
Gso19g0189 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Gso19g0189 1250 Gene3D - 361 624 IPR027417 -
Gso19g0189 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Gso19g0189 1250 SUPERFAMILY ABC transporter transmembrane region 26 348 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0189 Gso-Chr19 2358592 2368959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0189 2 1246 Calmodulin-binding Proteins AT2G36910 53.560 0.0 1357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0189 K05658 - gmx:100780618 2340.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0189 19 2358592 2368959 Gso19g0189 19 2358592 2368959 ECH
Gso13g0437 13 16256239 16266435 Gso19g0189 19 2358592 2368959 GST