Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0186 ATGGCTTTTCCTCCTTCTCACACCTTCATGTTCCAAACCCATGAAGATCATGATCCCCACCAGCTCCATCTGCGTTCAACTTCAACCTCTCTCAACGCTTTCCCCTCTTTCCCACCTCATCACTTTCAAGGTGCAGGAGGTTTAATGATGAAGCGTTCGATGTCGTTTTCCGGCATAGACAACAACAACAACAACAACAAGTGCGATGAATCGCACGGGGACGACGAGTTATCGGACGAGGGATCTCAGCTCCTAGGGGAGAAGAAGAAGAGGCTGAGTCTGGAGCAGGTGAAGGCGCTGGAGAAGAGCTTCGAGCTCGGGAACAAGCTCGAACCAGAGAGGAAAATGCAGCTGGCCAAAGCCCTAGGGCTTCAGCCGAGGCAGATAGCGATATGGTTTCAGAACAGAAGAGCTAGGTGGAAGACTAAGCAGCTTGAGAAGGAGTATGAAGTTCTCAAGAAACAGTTTGAAGCTGTTAAGGCCGATAATGACTCCCTCAAGTCCCAGAACCAGAAACTACATACAGAGTTACAAACTCTAAAAAGAAGGGACTGCAATGAAACTGGAACTGTAATTAGTCTCAAGAAAGAAACTGATCAGGGTTCTTGGAGCAATGGCAGCAACAACAGTTCAGAGATCAATTTGGATCTCTCAAGAACACCAGTGATGAACACTAGTCCTGTGTCTTCTCAGAATGGAAAATCCCTTTTACCAACAACTTCTTCTAAGCCTACAAGCATAACTCAACTCCTCCAATGCTCATCAAGACCAGATCTCCAAGATGAGAGCTTCTGCAACATGTTCCACATCATTGATGAGCAGCAGAATTTTTGGCCCTGGCCTGATCATCAGCAGCAGCAGCAACACCAGTTTCATTAA 879 0.4676 MAFPPSHTFMFQTHEDHDPHQLHLRSTSTSLNAFPSFPPHHFQGAGGLMMKRSMSFSGIDNNNNNNKCDESHGDDELSDEGSQLLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKSQNQKLHTELQTLKRRDCNETGTVISLKKETDQGSWSNGSNNSSEINLDLSRTPVMNTSPVSSQNGKSLLPTTSSKPTSITQLLQCSSRPDLQDESFCNMFHIIDEQQNFWPWPDHQQQQQHQFH* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0186 292 Coils Coil 135 183 - -
Gso19g0186 292 CDD homeodomain 88 144 IPR001356 GO:0003677
Gso19g0186 292 MobiDBLite consensus disorder prediction 56 80 - -
Gso19g0186 292 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Gso19g0186 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 292 IPR045224 GO:0003700
Gso19g0186 292 SMART HOX_1 86 147 IPR001356 GO:0003677
Gso19g0186 292 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 292 - -
Gso19g0186 292 Pfam Homeobox associated leucine zipper 143 182 IPR003106 GO:0006355|GO:0043565
Gso19g0186 292 Gene3D - 82 158 - -
Gso19g0186 292 PRINTS Lambda-repressor HTH signature 114 123 IPR000047 GO:0003677
Gso19g0186 292 PRINTS Lambda-repressor HTH signature 123 139 IPR000047 GO:0003677
Gso19g0186 292 MobiDBLite consensus disorder prediction 224 243 - -
Gso19g0186 292 Pfam Homeodomain 88 141 IPR001356 GO:0003677
Gso19g0186 292 ProSiteProfiles 'Homeobox' domain profile. 87 143 IPR001356 GO:0003677
Gso19g0186 292 SUPERFAMILY Homeodomain-like 87 145 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0186 Gso-Chr19 2278503 2282121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0186 1 282 Homeobox Transcription Factor Family AT5G15150 51.342 5.15e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso19g0186 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0186 K09338 - gmx:100816097 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0186 19 2278503 2282121 Gso19g0186 19 2278503 2282121 ECH
Gso13g0439 13 16333510 16336777 Gso19g0186 19 2278503 2282121 GST
Gso19g0186 19 2278503 2282121 Gso18g2108 18 54059799 54062613 PCT
Gso19g0186 19 2278503 2282121 Gso9g1964 9 44054786 44057202 PCT
Gso18g2108 18 54059799 54062613 Gso19g0186 19 2278503 2282121 PCT
Gso9g1964 9 44054786 44057202 Gso19g0186 19 2278503 2282121 PCT