Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0183 ATGGTTAGACACCAACGAGTTACTCAAAGATCCTCATCCACCAAAAGGTCAAAAAGATCCTCGTCCACCAACTTAAACCAGGAAATAATTGAAGTTTCTTCCCTTCTTCGAAGATTCACCTTTAATGATTTGAAGTTGGCAACTAGGAATTTTGAGTCTAAGAACTTTCTTGGTGTGGGGGGTTTTGGAAACGTGTTGAAAGGTTGGGTCAATGAGCATGGGAACTTTGCAGCACGACCTGGAACGGGGATTCAAGTCGCAGTGAAAACCCTCAACCCAAATGGATTTCAGGGTCACAAGGAATGGCTTGCTGAAATTAGTTACCTTAGTGAGCTTCATCATCCAAATCTGGTTAGGTTGGTTGGCTATTGCATCGAGGATGACAAAAGACTGTTAGTATATGAGTATATGTGTCAAAGAAGCTTAGACAAACATTTGTTCAAGACAACTAAGCACCTTACATGGCCTGTCAGAATTAAAATTGCAATTGGTGCGGCTAATGCCCTTGCATTTTTGCATGAGGAAGCTTCAAGACCAGTAATATTTCGAGATTTCAAGACATCTAATGTCCTATTGGATGAGGACTACAATGCAAAACTTTCCGACTTTGGGCTTGCGCAAGATGCTCCAATGGGAGATAAAACTCATGTTTCCACTGAAGTAATGGGAACACAAGGCTATGCAGCCCCTGAGTATGTTATGACAGGACACCTTACTTCCAAGAGTGATGTCTATAGCTTTGGGGTGGTTCTACTTGAAATGCTGACAGGAAGAAAAGCCATGGATCAAAGAAGGCCAAGGAAGGAGCAAAACTTGGTGGAATGGTTGCGCCCTCGTCTTAGGGAAAAAGATAATTTCCACTATCTGATGGATCCTAAACTTGAAGGTCAATATCCAATGAAAAGTGCTCGTAGAGTAATGTGGTTGGCCACTCACTGTATTCGCCATAATCCTAAATCAAGACCCCTTATGAGTGAAGTGGTTCGTGAGTTGAAGTCTTTGCCTCTTTTTCATGATGATAATGACATGGTTTCTGATCATCCTTGTCCCACAACCTCATCAGTTTCCTCAATCTCAATTTCCTCAAGCTCACTTAAAAGATTGCATGTTGGCCCCTCCAACCATGGTGGTGCAAACAAGTATGGCCCCAGAACTGGTCAATCACCAAACGTTCCAAGGCACTTTCAAGCTTATCCTCTACCTCTTCCAAATCCTGGTGTTGGATCTTCATCCAATCCTACTGTTGCATCTTCTTCATCCAACCCAAGATTTTAA 1275 0.4243 MVRHQRVTQRSSSTKRSKRSSSTNLNQEIIEVSSLLRRFTFNDLKLATRNFESKNFLGVGGFGNVLKGWVNEHGNFAARPGTGIQVAVKTLNPNGFQGHKEWLAEISYLSELHHPNLVRLVGYCIEDDKRLLVYEYMCQRSLDKHLFKTTKHLTWPVRIKIAIGAANALAFLHEEASRPVIFRDFKTSNVLLDEDYNAKLSDFGLAQDAPMGDKTHVSTEVMGTQGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRKAMDQRRPRKEQNLVEWLRPRLREKDNFHYLMDPKLEGQYPMKSARRVMWLATHCIRHNPKSRPLMSEVVRELKSLPLFHDDNDMVSDHPCPTTSSVSSISISSSSLKRLHVGPSNHGGANKYGPRTGQSPNVPRHFQAYPLPLPNPGVGSSSNPTVASSSSNPRF* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0183 424 ProSitePatterns Protein kinases ATP-binding region signature. 57 89 IPR017441 GO:0005524
Gso19g0183 424 CDD STKc_IRAK 57 334 - -
Gso19g0183 424 Gene3D Transferase(Phosphotransferase) domain 1 137 346 - -
Gso19g0183 424 PANTHER OS01G0588500 PROTEIN-RELATED 9 364 - -
Gso19g0183 424 MobiDBLite consensus disorder prediction 1 23 - -
Gso19g0183 424 Pfam Protein tyrosine and serine/threonine kinase 54 331 IPR001245 GO:0004672|GO:0006468
Gso19g0183 424 ProSiteProfiles Protein kinase domain profile. 51 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0183 424 MobiDBLite consensus disorder prediction 405 424 - -
Gso19g0183 424 Gene3D Phosphorylase Kinase; domain 1 8 136 - -
Gso19g0183 424 SUPERFAMILY Protein kinase-like (PK-like) 34 361 IPR011009 -
Gso19g0183 424 MobiDBLite consensus disorder prediction 346 369 - -
Gso19g0183 424 MobiDBLite consensus disorder prediction 345 424 - -
Gso19g0183 424 PANTHER TYROSINE KINASE FAMILY PROTEIN 9 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0183 Gso-Chr19 2254084 2257449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0183 3 367 Glycoside Hydrolase AT3G07070 45.358 7.72e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso19g0183 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0183 - - gmx:100819830 813.527