Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0180 ATGGAGGCCATGTTAAAATTGTCTAGTCTTTGTGGTCAAGAGATAGATGATAAGAGAGATACTTCCATTTGCTCAGAAGAGGACTTGTGTATTGAAAAGGGTAGTAAGGAAGATAAACTTGAATCTGCTAAAGCTGAGATGAGTAAGGTGAAGGAGGAGAATGAAAGATTGAAGATGATGATAGAAAGAGTAGGAAAGAATTACCATTCTCTTCAACTTCGTTTCTTTGACATCCTTCATAGAGAAACTTCAAACAAAGGTGTGGAAGATTCAGCTGTTTCCCTTGATGAAGTGGAGGAACCTAAGCTTGTGTCACTTTGTCTTGGAACAAGTCCATGGGAGCATAAAAAGGATGGAATAATCTGTAACTCTAGCAAACATAAAGAAAATGAAGATTTGGAAGCCAGCCTTACCCTTGGTTTAGACTGCAAAGGTGTGTCTTCAAAGGAACAGGTATCTGATATGAACACCTCAGAAGAAAAGGAAGAAGATTCAACAAATAAATTAGTAAGGACCAAAGATGGAGGTGATGAAATTTCAGAGATAACACCCCCAGCCAAGAGGGCTAGAGTTTGTGTCAGAGCAAGATGTGATAGTCCCGTTATGCATGATGGATGCCAGTGGAGGAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACACTTGCTCCAGCATGCCCGGTTAGGAAACAGGTGCAAAGATGTGCTGATGACATGTCCATCTTAATCACCACATATGAAGGAACTCACAACCACCCAATTCCAGCTTCAGCCACAGCCATGGCTTCCACCACTTCTGCTGCTGTTTCCATGTTGTTGTCAGGCTCTTCAACATCTCAGCCTACAGATCACAGTTTTGCCTATCATGCAAATTCTCCTACACTGTTCAGTGGTGTCAATTTCAGTCTTTTAGACCAACCAAGAGCAAACCAAGTCTTGTTACCAACCCCTTCCTCACATTTACTCCCAACAATCACTCTAGACCTTACTTCTACTCCATCCTATTCATTAAATCAAGGGAATTGTTTACCATCAAACTTTGCTTCAACCCCAAGATTCCCTCCATTAAGTCTAAACTTTTGGTCCCCAGAGTCCAACATTCCACTATCCTTTTGGGGCAAGGGAATTCCTAACAATGGCACTATTCCTATTGACAAAACTCACATCAAGCCATTCAATATAGGAAACCAATTTCAAGAACATTTCTACCAACATTACTTCAAGAACCAAACTCCATTCAGGGAGGCTTTGGCAGAAACACTAACCAAAGCAATCAGCACAGACACGAGTTTTCGGTCAGCGATAGCTGCTGCAGTTTCATCTATAAGGGGACAAGGATCAAGCAGTGAGAACAAGGGTGATGGAGAGGTTTTAGGTTCAGGATTGAGCTTGAAACTTGGGGAGCATCCTCAACTTGCTTCTTCCAATTCCTTGAACAAGAATGAGAAAGAATGCTTAACAGGCTACTTCAACAGATCATCATCTTCATCTTCAAGTTCTCAGGGTGGAAACTCAATGCTTCTCCAACCTCAATGGCCATTTTCTATTCGCAAGACTAGCACACCTCCTTCCAATGTTGATTACATCAACCATTGGATTTCAGAAATCAATTCTCATCATTAG 1647 0.4141 MEAMLKLSSLCGQEIDDKRDTSICSEEDLCIEKGSKEDKLESAKAEMSKVKEENERLKMMIERVGKNYHSLQLRFFDILHRETSNKGVEDSAVSLDEVEEPKLVSLCLGTSPWEHKKDGIICNSSKHKENEDLEASLTLGLDCKGVSSKEQVSDMNTSEEKEEDSTNKLVRTKDGGDEISEITPPAKRARVCVRARCDSPVMHDGCQWRKYGQKIAKGNPCPRAYYRCTLAPACPVRKQVQRCADDMSILITTYEGTHNHPIPASATAMASTTSAAVSMLLSGSSTSQPTDHSFAYHANSPTLFSGVNFSLLDQPRANQVLLPTPSSHLLPTITLDLTSTPSYSLNQGNCLPSNFASTPRFPPLSLNFWSPESNIPLSFWGKGIPNNGTIPIDKTHIKPFNIGNQFQEHFYQHYFKNQTPFREALAETLTKAISTDTSFRSAIAAAVSSIRGQGSSSENKGDGEVLGSGLSLKLGEHPQLASSNSLNKNEKECLTGYFNRSSSSSSSSQGGNSMLLQPQWPFSIRKTSTPPSNVDYINHWISEINSHH* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0180 548 SUPERFAMILY WRKY DNA-binding domain 195 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso19g0180 548 SMART WRKY_cls 202 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g0180 548 Coils Coil 33 67 - -
Gso19g0180 548 Gene3D WRKY domain 187 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso19g0180 548 ProSiteProfiles WRKY domain profile. 197 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g0180 548 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 35 532 - -
Gso19g0180 548 Pfam WRKY DNA -binding domain 204 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g0180 548 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 35 532 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0180 Gso-Chr19 2236646 2240042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0180 47 526 WRKY Transcription Factor Family AT5G15130 39.850 4.01e-82 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso19g0180 WRKY 8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0180 - - gmx:100819296 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0180 19 2236646 2240042 Gso6g1605 6 16793083 16798205 ECH
Gso19g0180 19 2236646 2240042 Gso19g0180 19 2236646 2240042 ECH
Gso2g0174 2 1817996 1826164 Gso19g0180 19 2236646 2240042 ECH