Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0173 ATGGGGTTTGGGAGTAATGCAGTTCAAGCAGGGAGTTTGGATGTGGACAAGTCAAATGAAAGGAAGAAGGTAGAAGGTGCTGGAAAGGAGAGAAAATGGTGGTTTAGATTTAGCTTCTTTGGGAGCTGCATACCTTCAGGATCAAAAGTTGATAGCACCATAAGTGGCACTAAGGCCCATAATGGTGAAAATGTCAAATCAGTGATAGTTGGATCAGAGGAAAACAAATCTGCATCTGATAAAATCACAAAGGAAACTGTTGCTACTGAAGAGTCCTCTACAACAGCTAGCGATGCGGAAAGTAACCCTTCCACACCAAAATTCAGTGAGGAGTTGAAGTTTGCTTCTTGTATGAGAAAATTCACATTCAATGGACTTAAGGTGGCAACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTCTTCAAGGGTTGGATCGAGGAAAATGGAACTGCACCTGTGAAACCAGGTACTGGACTCACGGTTGCGGTCAAGACTCTTAACCACAATGGACATCAGGGTCACAAAGAGTGGCTTGCTGAATTAAATTATCTTGGTGATCTTGTCCATCCTAATCTTGTTAAGTTGATTGGTTTCTGTATTGAAGATGACCAAAGATTACTGGTTTATGAGTTTATGCCCCGAGGCAGTTTGGAGAACCACCTCTTTAGAAGGCCCCTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCAGCCAAAGGTCTTGCTTTTCTCCATGAAGAGGCTCAGAGGCCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCCAAAGATGGTCCTGAGGGGGAGAAGACACATGTATCTACAAGAGTTATGGGAACATATGGTTATGCTGCTCCTGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTATACAGCTTTGGAGTAGTGCTACTTGAAATGCTCACAGGCCGGCGATCCATTGATAAGAAAAGACCAAATGGGGAACACAATCTGGTAGAGTGGGCTAGACCTGTACTGGGAGACCGGAGGATGTTCTACCGGATAATCGATCCCCGCCTTGAAGGCCACTTCTCGGTCAAAGGGGCGCAGAAAGCTGCCCTGCTGGCTGCTCAATGCCTTAGCCGTGATCCAAAATCTAGACCCTTGATGAGTGAAGTTGTTCGAGCTTTAAAGCCTCTGCCAAGCCTCAAGGACATGGCAATCTCATCTTATCACTTCCAGATTGCGCGCGTAGATCGAACCATGTCCATGCCGAATCATAAAAACGGTATTAGAACACAGTTAGTATCTGTGCCAAGGAAGGGTCAACCTGTAAGGACATTGTCTAGTCCAAATGTTCCACATGGTTCTCCATACCTTCATCATACCAAGTCTCCAAAACCTATTGGGTAA 1461 0.4428 MGFGSNAVQAGSLDVDKSNERKKVEGAGKERKWWFRFSFFGSCIPSGSKVDSTISGTKAHNGENVKSVIVGSEENKSASDKITKETVATEESSTTASDAESNPSTPKFSEELKFASCMRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHNGHQGHKEWLAELNYLGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKKRPNGEHNLVEWARPVLGDRRMFYRIIDPRLEGHFSVKGAQKAALLAAQCLSRDPKSRPLMSEVVRALKPLPSLKDMAISSYHFQIARVDRTMSMPNHKNGIRTQLVSVPRKGQPVRTLSSPNVPHGSPYLHHTKSPKPIG* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0173 486 ProSitePatterns Protein kinases ATP-binding region signature. 139 171 IPR017441 GO:0005524
Gso19g0173 486 PANTHER OS01G0588500 PROTEIN-RELATED 63 478 - -
Gso19g0173 486 MobiDBLite consensus disorder prediction 1 27 - -
Gso19g0173 486 ProSiteProfiles Protein kinase domain profile. 133 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0173 486 MobiDBLite consensus disorder prediction 67 107 - -
Gso19g0173 486 Gene3D Transferase(Phosphotransferase) domain 1 219 432 - -
Gso19g0173 486 SUPERFAMILY Protein kinase-like (PK-like) 107 413 IPR011009 -
Gso19g0173 486 Gene3D Phosphorylase Kinase; domain 1 117 218 - -
Gso19g0173 486 Pfam Protein kinase domain 136 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0173 486 MobiDBLite consensus disorder prediction 88 107 - -
Gso19g0173 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Gso19g0173 486 MobiDBLite consensus disorder prediction 449 486 - -
Gso19g0173 486 PANTHER RECEPTOR-LIKE KINASE PLANT 63 478 - -
Gso19g0173 486 CDD STKc_IRAK 139 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0173 Gso-Chr19 2131758 2137109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0173 119 429 Glycoside Hydrolase AT3G07070 56.051 2.68e-116 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso19g0173 Pkinase 6.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0173 - - gmx:100499647 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0173 19 2131758 2137109 Gso18g2086 18 53830980 53835365 PCT
Gso19g0173 19 2131758 2137109 Gso9g1975 9 44166859 44171017 PCT
Gso18g2086 18 53830980 53835365 Gso19g0173 19 2131758 2137109 PCT
Gso9g1975 9 44166859 44171017 Gso19g0173 19 2131758 2137109 PCT