Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0156 ATGCATATTGCATCACCATTACATAATTCACTCACTCCTATTCCCTTACATCTCTTCTTCTTCTTTGTCTTATTTCTTCTCTCATTTCAAAAAATGGGAAGGCCTCCTTGTTGTGACAAATCCAATGTGAAAAGGGGTCTTTGGACTCCTGAGGAAGATGCTAAAATACTTGCCTATGTGGCCAATCATGGAACTGGAAACTGGACATTGGTTCCGAAGAAAGCAGGGCTTAAAAGGTGTGGTAAAAGCTGCAGGCTAAGATGGACCAACTACCTAAGACCTGACCTCAAGCATGATGGTTTTACTCCCCAAGAAGAAGAGCTCATTATTAACCTACATGGAGCCATAGGAAGCAGATGGTCTATAATTGCAAAAAGACTACCCGGAAGAACAGACAATGATGTCAAGAACTACTGGAACACAAAGCTAAGGAAGAAGCTTATGAAGATGGGAATTGATCCGGTGACACATAAGCCGGTATCACAAGTCCTCTCTGACTTGGGAAGCATTAGTGGCCTCCCAAACACCACCACAAACCAAATTGCTTTTATCAACAAGGACTTGATGAGCAACATGCTACCAATTACCAAAACTGAACCATCAGGTTCCAACAACTCAACGGTGGAGCACACACAAGAGGGTCAAGTTCCCTCATGGGAACACCACATTCCTTACCAAGTTATCATCAACTCCGAAAATATTCAATCACATGTCTTAAGTGAAGCTGCATCCTCAACCTCATCCTCATCTTCCTCTAATATCACGCAATTAGGATCACCACAATCCTACTCTTGCCAAACCCCTCAGGCTCAAATTGCCCCTCCTTGTTCCAACTTTGATTGGAGTGAGTTTCTTCAAAGTGACTCATTTAATTGGTCATTGAACCCCTCCTCAGGTATAATTCAAAGTGAAGCTGAACTTTCCAACAATGCCAAAAGCAATGGCAATGACATGCAAGGAGATGCAAGTGAGGGTTCTGGTTCTGGTGCTGTTGCTTGTGGTGCAAGCATGGAATATCAAATTAACAAGCAGTGTGAAGCTCATTCATTTGTGGATGGTATTTTGGACAGGAATAGTGAGATAAGAGCAGCATTCCCTGAGCTTTTGGATGCTTCTTTTGACTACTAA 1128 0.4255 MHIASPLHNSLTPIPLHLFFFFVLFLLSFQKMGRPPCCDKSNVKRGLWTPEEDAKILAYVANHGTGNWTLVPKKAGLKRCGKSCRLRWTNYLRPDLKHDGFTPQEEELIINLHGAIGSRWSIIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISGLPNTTTNQIAFINKDLMSNMLPITKTEPSGSNNSTVEHTQEGQVPSWEHHIPYQVIINSENIQSHVLSEAASSTSSSSSSNITQLGSPQSYSCQTPQAQIAPPCSNFDWSEFLQSDSFNWSLNPSSGIIQSEAELSNNAKSNGNDMQGDASEGSGSGAVACGASMEYQINKQCEAHSFVDGILDRNSEIRAAFPELLDASFDY* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0156 375 MobiDBLite consensus disorder prediction 310 329 - -
Gso19g0156 375 SMART sant 44 94 IPR001005 -
Gso19g0156 375 SMART sant 97 145 IPR001005 -
Gso19g0156 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 147 IPR017930 -
Gso19g0156 375 MobiDBLite consensus disorder prediction 195 214 - -
Gso19g0156 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 96 IPR017930 -
Gso19g0156 375 PANTHER F14D16.11-RELATED 32 375 - -
Gso19g0156 375 SUPERFAMILY Homeodomain-like 42 139 IPR009057 -
Gso19g0156 375 MobiDBLite consensus disorder prediction 240 269 - -
Gso19g0156 375 MobiDBLite consensus disorder prediction 195 216 - -
Gso19g0156 375 CDD SANT 101 143 IPR001005 -
Gso19g0156 375 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Gso19g0156 375 Pfam Myb-like DNA-binding domain 45 92 IPR001005 -
Gso19g0156 375 Pfam Myb-like DNA-binding domain 101 141 IPR001005 -
Gso19g0156 375 Gene3D - 99 162 - -
Gso19g0156 375 CDD SANT 48 92 IPR001005 -
Gso19g0156 375 ProSiteProfiles Myb-like domain profile. 40 92 IPR001005 -
Gso19g0156 375 PANTHER F14D16.11-RELATED 32 375 - -
Gso19g0156 375 Gene3D - 38 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0156 Gso-Chr19 1880774 1883441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0156 32 375 MYB Transcription Factor Family AT3G28470 49.148 5.13e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g0156 Myb_DNA-binding 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0156 K09422 - gmx:100815077 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0458 13 16637238 16639390 Gso19g0156 19 1880774 1883441 GST