Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0148 ATGCGAGAGGATCAGAACCATATTGGTGTTGACACGAAGAAGAAGAAAAATGGGTCTATTGGGTCCATTTTCATGCATGCTGATGGCCTAGATTGGTTTTTAATGGTTTTGGGTGTCTTTGGAGCCATGGGTGATGGCTTCAGCTCCCCTGTCATGATGTACTTCATTGGCAGAATCGTGAACAATATTGGTGATGTTTCAAAAATCACACCAAGTACTTTCATGCACAACGTCAATAAGTATTCACTGGCGTTGTCATATTTTGCTAGTGCGTCCTTTTTTACTTCTTTCCTCGAGGGTTATTGTTGGACGAGAACAAGTGAAAGACAAGCTGCAAGAATGAGAGTTAAGTATTTAAAAGCAGTGCTTAGACAAGATGTATCATATTTTGATTTGCATGTCACAAGCAAGTCTGAAGTCCTCACCTGTGTCTCTAGTGATAGTCTCGTTATTCAAGAAGTTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATTTCTTTAGGTTCGTTGGAAGCTACATAGCAGCTTTTGTTTTGTTGTGGAAATTGGCCATTGTGGCGTTTCCCTTTGTGGTGCTTCTTGTGATCCCTGGTTTAATTTATGGGAAGACTATGATGGGGTTGGCTAGAAGGATCAGAGAAGAGAGTAATAAGGCTGGTACAATAGCAGAACAAGCAATATTTTCCATCAGAACCGTTTATTCCTTTGTGGGGGAAAGCAAGACCATAAATGCTTTCTCTGATGCTCTACAAGGCTCTGTTAAGTTAGGGCTGAGACAAGGCTTAGCTAAAGGATTAGCCATTGGAAGCAATGGTGTTGTGTTTGCTATATGGTCTTTCATGGTCTATTATGGAAGCAGATTGGTCATGTACCATGGTGCTAAAGGAGGGACTGTGTTTGCGGTTGGATCAGTCATATGTATTGGTGGATCGGCCTTAGGTGCTAGTTTATCTGAGTTGAAGTACATCACAGAAGCATGTGTTGCTGGGGAACGCATAATGGAAATGATAAAAAGAGTTCCCAATATTGATTCTGAAAATATGGCTGGGGTGATTCTAGAGAAAGTCTCAGGGGAAGTGGAATTTGATCATGTTAAATTTATCTACCCATCAAGGCCCGACAACGTTATTTTGAATGATTTTTGCCTGAGGATTCCGGCAGGGAAAACATTGGCTTTAGTTGGAGGGAGTGGCTCAGGAAAATCCACTGTGATATCACTTTTGCAAAGATTTTATGACCCAATTGAGGGAGAGATACGTCTTGATGGTGTGGCTTATCATAGGTTGCAACTCAAGTGGCTAAGGTCACAGATGGGTTTGGTTAGCCAAGAGCCTACCCTTTTTGCAACTAGCATTAAGAAGAATATGCTTTTTGGAAGAGAAGATGCTAATGAGGAAGAGATTGTTGAGGCTGCCAAAGCTGCCAATGCTCATGATTTCATTTCACAGTTGCCACAAGGATACAATACCCAGGTTGGAGAGAAAGGAGTTCAAATATCAGGGGGACAAAAGCAGAAAATTGCTATTGCACGAGCAATAATAAAAAAACCCCAAATCCTTCTTCTAGATGAGGCAACAAGTGCACTAGACTCTGAATCTGAACGCAAAGTACAAGAAGCTCTTGATAAAATTGTACTGGATCGAACTACCATTATCATAGCTCATCGCTTATCCACAATAAGAGATGCACATGTCATTATTGTTTTGGAGAATGGGAAGATCATGGAGATGGGTTCTCATGATGAGCTTATACAAAACAACAATGGGTATTACACATCTCTAGTTCATTTCCAGCAAGTTGAGAAATCCAAAAATGATGCATTCTTTCACCCTCTTATTTCAAATGGAGACATGCAAAACACAAGTAGTCATATGGCACGACATTCTGTTTCTACAAACTCAATGGCTCAATTTTCTTTTGTTGATGGAGATAATACCGAAAAAGTTAGAGATGATGATCAAAAGCTCCCATCTCCTTCATTTTGGAGATTGTTATCATCTAATCTTCGAGAGTGGAAACAAACATGTTTCGGGTGTTTGAGTGCATTGTTATTCGGTGCAATTGAGCCCTTGTACGCATTTGCAATGGGTTCCATGGTATCAATTTTTTTCCTCTCAAATCATGATGAGATTAAAAGGAAAATTATATTATATTCTCTATTTTTTGTGGGATTGGCTGTGCTTTCATTAGTTCTTAATATCATCCAACACTATAGTTTTGCTTACATGGGAGAGTACTTGACCAAAAGGCTGAAAGAGAAAATGCTTTCCAAGATACTCAACTTTGAAATTGCATGGTTCGATCGTGATGAAAATTCCACGGGTGTTGTTTGCTCTAGACTAATTAAAGAAGCCAATATAGTTCGATCTTTGGTCGGAGATAAAATGGCTCAATTGGTACAAACTATCTCTAGTGTGGTAATAGCATGTACAATGGGACTAATCATTGCATGGAGATATGCCATTGTAATAATTGTTGTTCAGCCTATTATTATTGCATGTTTCTACACAAGATGTGTACTGCTCAAGGGCATGTCTGAAAAGGCCATCAAAGCCCAAGATAAAAGTAGCAAAATAGCCATTGAAGCTATTTCCAACTTTCGAACCATCACTTCCTTTTCCTCACAAGACCATGTCATAAAAATGCTAAAAAAGGCTCAAGAAGGTCCAAGCCATGAAAGCATTCAACAATCATGGTTTGTAGGCATTGGACTTGGGTGTGCTCGAAGCCTTAAAACTTTAACTCAAGCTTTAGAATTTTGGTATGGTGGAAAGCTTGTTTTCCATGACTACATTACTTCAAAAGCACTGTTTGAGATTTGTTTAATATTTGCAAATATAGGAAGAGTCATAGCAGATGCTAGTAGCCTGGCCAACGACATTGCAAAAGGAGTAACTGTCTCTGGCTTAGTTTTCTCAATCTTAGATAGAAACACAAAAATAGAGCCTCATGAAACGAATGCATACAAGCCCCAAAAGTTAACGGGAGATATAGAACTCCAAGATGTCTATTTTGCATACCCATCAAGACCCAATGTAATGATTTTCCAAGACTTCTCAATGAAAATTGAAGCAGGCAAATCCACAGCATTGGTAGGGCAAAGTGGGTCGGGCAAATCAACTATAATAGGCTTAATAGAGAGATTTTATGATCCACTTGAAGGGATAGTAACCATGGATGGCATTGACATAAGGTCATATCACCTTAGGTCACTAAGGAACTACATTGCACTTGTGAGCCAAGAGCCAACACTTTTTAATGGGACCATAAGGGAAAACATTGCATATGGAGCATTTGATAAGACTAATGAAGCTGAGATCATTGAAGCTGCAAGGATAGCTAATGCTCATGACTTTATTGCAAGCATGAAGGATGGTTATGACACATGGTGTGGAGATAGAGGATTGCAATTATCTGGGGGCCAAAAGCAGAGGATTGCAATAGCTAGGGCTGTGTTGAAGAACCCAAATGTGTTACTTTTGGATGAGGCCACCAGTGCAATTGATAGTCAAGCAGAGAATGTGGTTCAAAATGCTTTGGAGAGAGTGATGGTAGGAAGGACGAGTGTAGTGGTGGCTCACAGGTTGAACACTATAAAGAATTGTAATCAAATTGTTGTTTTAGATAAAGGAAGGGTTGTAGAAGAAGGAAACCATACCTCTTTGTTGGCTAAGGGACCAAATGGAGTTTACTACTCTTTGGCGAGTCTTCAAAGAAGTTTAGTAACCACCAGTGTTATTAATACCGAATAA 3753 0.3946 MREDQNHIGVDTKKKKNGSIGSIFMHADGLDWFLMVLGVFGAMGDGFSSPVMMYFIGRIVNNIGDVSKITPSTFMHNVNKYSLALSYFASASFFTSFLEGYCWTRTSERQAARMRVKYLKAVLRQDVSYFDLHVTSKSEVLTCVSSDSLVIQEVLSEKVPNFLMNFFRFVGSYIAAFVLLWKLAIVAFPFVVLLVIPGLIYGKTMMGLARRIREESNKAGTIAEQAIFSIRTVYSFVGESKTINAFSDALQGSVKLGLRQGLAKGLAIGSNGVVFAIWSFMVYYGSRLVMYHGAKGGTVFAVGSVICIGGSALGASLSELKYITEACVAGERIMEMIKRVPNIDSENMAGVILEKVSGEVEFDHVKFIYPSRPDNVILNDFCLRIPAGKTLALVGGSGSGKSTVISLLQRFYDPIEGEIRLDGVAYHRLQLKWLRSQMGLVSQEPTLFATSIKKNMLFGREDANEEEIVEAAKAANAHDFISQLPQGYNTQVGEKGVQISGGQKQKIAIARAIIKKPQILLLDEATSALDSESERKVQEALDKIVLDRTTIIIAHRLSTIRDAHVIIVLENGKIMEMGSHDELIQNNNGYYTSLVHFQQVEKSKNDAFFHPLISNGDMQNTSSHMARHSVSTNSMAQFSFVDGDNTEKVRDDDQKLPSPSFWRLLSSNLREWKQTCFGCLSALLFGAIEPLYAFAMGSMVSIFFLSNHDEIKRKIILYSLFFVGLAVLSLVLNIIQHYSFAYMGEYLTKRLKEKMLSKILNFEIAWFDRDENSTGVVCSRLIKEANIVRSLVGDKMAQLVQTISSVVIACTMGLIIAWRYAIVIIVVQPIIIACFYTRCVLLKGMSEKAIKAQDKSSKIAIEAISNFRTITSFSSQDHVIKMLKKAQEGPSHESIQQSWFVGIGLGCARSLKTLTQALEFWYGGKLVFHDYITSKALFEICLIFANIGRVIADASSLANDIAKGVTVSGLVFSILDRNTKIEPHETNAYKPQKLTGDIELQDVYFAYPSRPNVMIFQDFSMKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLEGIVTMDGIDIRSYHLRSLRNYIALVSQEPTLFNGTIRENIAYGAFDKTNEAEIIEAARIANAHDFIASMKDGYDTWCGDRGLQLSGGQKQRIAIARAVLKNPNVLLLDEATSAIDSQAENVVQNALERVMVGRTSVVVAHRLNTIKNCNQIVVLDKGRVVEEGNHTSLLAKGPNGVYYSLASLQRSLVTTSVINTE* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0148 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g0148 1250 Gene3D - 988 1239 IPR027417 -
Gso19g0148 1250 Gene3D - 350 599 IPR027417 -
Gso19g0148 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1238 IPR027417 -
Gso19g0148 1250 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524
Gso19g0148 1250 Pfam ABC transporter transmembrane region 676 938 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g0148 1250 Pfam ABC transporter transmembrane region 36 301 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g0148 1250 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Gso19g0148 1250 Pfam ABC transporter 1017 1166 IPR003439 GO:0005524
Gso19g0148 1250 Gene3D ABC transporter type 1, transmembrane domain 971 1246 IPR036640 GO:0005524|GO:0016021
Gso19g0148 1250 Gene3D ABC transporter type 1, transmembrane domain 23 965 IPR036640 GO:0005524|GO:0016021
Gso19g0148 1250 SUPERFAMILY ABC transporter transmembrane region 662 977 IPR036640 GO:0005524|GO:0016021
Gso19g0148 1250 SUPERFAMILY ABC transporter transmembrane region 31 341 IPR036640 GO:0005524|GO:0016021
Gso19g0148 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Gso19g0148 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 963 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g0148 1250 CDD ABC_MTABC3_MDL1_MDL2 998 1238 - -
Gso19g0148 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 998 1235 IPR003439 GO:0005524
Gso19g0148 1250 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524
Gso19g0148 1250 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 21 1242 - -
Gso19g0148 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 1242 IPR039421 -
Gso19g0148 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 981 - -
Gso19g0148 1250 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Gso19g0148 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 598 IPR027417 -
Gso19g0148 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 35 333 - -
Gso19g0148 1250 SMART AAA_5 387 573 IPR003593 -
Gso19g0148 1250 SMART AAA_5 1025 1198 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0148 Gso-Chr19 1761299 1768921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0148 678 1248 Calmodulin-binding Proteins AT2G36910 36.806 2.07e-106 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0148 K05658 - gmx:100808766 2389.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0148 19 1761299 1768921 Gso19g0148 19 1761299 1768921 ECH