Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0147 ATGTGCAAAATGCGCGTGGATCAGAACCATACTATTGTTAACACGAAGAAGAAGAAGAAGAAAAATGGGTCAATTAGATCCATTTTCATGCATGCTGATAGCCTAGATTGGTTTTTAATGGTTTTGGGTGTCTTTGGAGCCATGGGTGATGGCTTCACCACCCCTATCTCGGTGTACATCATGAGCGGAATCGTGAACAATGTTGGTGGTGTTTTAAAAATGACACCAAGTACTTTCATCCACAACGTCAATAAGTATTCACTGGCGTTGACATACTTGGCTTGTGCATCCTTTTTTGCTTCCTTCCTCGGTGAAAGACAAGTTGCAAGAATGAAAGTTAAGTATTTAAAAGCAGTGCTCAGACAAGATATAACATACTTTGATTTGCATGTCACAAGCACGTCCGAGGTTCTCACATGTGTCTCTAGTGATAGTTTCGTCATTCAAGATGTTCTCAGTGAAAAGGTTCCAAATTTTTTGATGAACTTCTTTAGGTTCCTTGGAAGCTACATAGTGGCTTTTGCTTTGTTTTGGAGATTGGCCATTGTGGGGTTCCCTTTTGTGGTTCTTCTTGTGATCCCTGGTTTGATTTACGGGAAAACTATGATAAGGTTGGCTAGAAAGATCAGAGAAGAGAGTAACAAGGCTGGTACAATAGCAGAACAAGCAATATCTTCCATCAGAACTGTTTATTCCTTCGTGGGGGAAAGCAAGACCATAAATGCTTTCTCTGATGCTCTACAAGGCTCTGTTAAGTTGGGGCTGAGACAAGGCTTAGCTAAAGGTTTAGCCATTGGAAGCAAAGGTGCTGTGTTTGCTATATGGTCTTTCATGTGCTATTATGGAAGTAGATTGGTCATGTACCATGGTGCTAAAGGAGGGACTGTATTCGCAGTTGGATCAGTCATATGTATTGGTGGATCGGCATTAGGTGCTAGTTTATCTGAGTTGAAGTACTTCACAGAAGCATGCGCTGCTGGGGAACGCATAATGGAAATTATAAAAAGAGTTCCCAATATTGATTCCGAAAATATGGCTGGGGAGATTCTAGAGAGGGTCTCAGGAGAAGTGGAATTTGATAATGTGAAATTTGTGTATCCATCAAGGCCAGACAGTGTTATTCTGAATGATTTCTGCCTAAAGATTCCAGCAGGGAACACAGTGGCATTGGTTGGAGGAAGTGGGTCAGGAAAGTCCACTCTGATTTCACTTTTGCAAAGATTTTATGACCCAATTGAGGGAGAGATACGTCTTGATGGTGTGGCTATTAATAGGTTGCAACTCAAGTGGTTTAGGTCTCAAATGGGTTTGGTTAGCCAAGAGCCTACTCTTTTTGCAACTAGCATTAAGGAGAATATACTTTTTGGAAAAGAAGATGCCAATGAGGAAGACATTGTTGAGGCTGCCAAAGCTGCCAATGCTCACGATTTCATTTCGCAGTTGCCACAAGGATACAATACCCGGGTTGGAGAGAAAGGAGTTCAAATATCAGGGGGGCAAAAACAGAGGATTGCTATTGCACGAGCAATAATAAAAAAACCCCAAATCCTTCTTCTAGATGAGGCAACAAGTGCACTAGACTCCGAATCAGAACGCAAAGTGCAAGAAGCTCTTGATAAAATTGTTCTGGATCGAACTACCATTGTCGTAGCTCATCGCTTATCCACAATAAGAGATGCACATGTCATTATTGTTTTGGAGAATGGGAAGATCATAGAGATGGGTTCTCATGGTGAGCTCACACAAATTGACAATGGGCTTTACACATCTCTTGTTCATTTCCAACAAGTTGAGAAATCCAAAAATGACACACTCTTTCACCCTTCTATTTTAAATGAAGACATGCAAAACACAAGTAGTGATATTGTAATTAGTCATTCTATTTCTACAAACGCAATGGCTCAATTTTCTCTTGTTGATGAAGATAATGCCAAAATAGCCAAAGATGATCAAAAGCTCTCACCTCCTTCATTTTGGAAATTGTTAGCATTGAATCTGCCTGAGTGGAAACAAGCATGTTTGGGGTGTTTGAATGCAACGTTATTTGGTGCAATTGAGCCATTGTATGCATTTGCAATGGGCTCCATGATATCAATTTTTTTCCTCACAGATCATGATGAGATTAAAAAGAAAGTTGTTATCTATTGTTTATTTTTTATGGGATTGGCTGTGTTTTCATTGGTTGTTAATATCATCCAACATTATAGTTTTGCTTACATGGGAGAATACTTGAGCAAAAGGGTGAAAGAAAGCATGCTTTCCAAGATACTCAATTTTGAAGTTGCATGGTTCGATCAGGACAAAAATTCCACCGGTGTGATTTGCTCTAGACTAACTAAAGAAGCCAATATAGTTAGGTCTTTAGTGGGAGATAGAATGGCTCTGTTGGTACAAACTATTTCAGCAGTGGTGATAGCATGCACAATGGGCCTAATCATTGCATGGAGATTTGCCATTATATTGATTGTTGTTCAACCTATTGGCATTGCAAGTTTCTACACAAGACTTGTACTCCTCAAGGGTATGTCTAAAAAGGCTATCAAAGCCCAAGATGAAACTAGCAAAATAGCTATTGAAGCTATTTCTAACCTTCGAACCATCACTGCCTTTTCCTCACAAGACCAGGTCATAAAAATGTTAAAAAAGGCTCAAGAAGGCCCAATCCGTGAAAATATTAGACAATCATGGTTTGCAGGCATTGGGCTTGGATGTGCTCGAAGCCTTACAACTTTCACTCGGGCTTTAGAATATTGGTATGGTGGAAAGCTTGTTTTCGATGGCTATATTACTTCAAAACAATTATTTCAAACATGCTTAATATTGGCAAATACAGGTAGGGTCATAGCAGATGCTAGTAGCCTTACTAGTGACGTTGCAAAAGGGGCAGATGCCATTGGCCTAGTTTTCTCAATCTTAAACAGAAACACAAAAATAGATTCTGATGAAATGACTGCATACATGCCCCAAAAGTTAATAGGCCATATAGAATTTCAAGATGTCTATTTTGCATACCCATCAAGACCCAATGTGATGATTTTCCAAGAATTCTCAATCAAAATTGATGCAGGTATATCCACAGCAGTGGTAGGACAAAGTGGGTCTGGCAAATCAACTATAATGGGCTTAATAGAGAGGTTTTATGACCCACTTAAAGGGATAGTAATGATAGATGGAAGAGACATAAGGTCATATCACCTTAGGTCACTAAGGAACTACATTTCACTTGTGAGCCAAGAGCCAACACTTTTTAATGGGACCATAAGGGAAAACATTGCATATGGAGCATTTGATATGACTAATGAAGTTGAGATCATTGAAGCAGCCAGAATAGCTAATGCTCATGACTTTATTGCAGGCATGAAGGACGGTTATGACACATGGTGTGGAGATAGGGGAGTTCAATTATCTGGGGGGCAAAAGCAGAGGATTGCAATAGCTAGGGCTGTGCTAAAAAACCCAAAAGTGTTGCTTTTGGATGAGGCTACTAGTGCACTTGATAGTCAATCAGAGAAGGTGGTTCAAGATGCTTTGGAACGAGTGATGGTAGGAAGGACGAGTGTGGTGGTGGCTCATAGGTTGAGCACTATAAAGAATTGTAATCGAATTGTTGTGTTGAACAAAGGGAGGGTGGTAGAAGAAGGGACCCATTTGTGTTTGTTGTCTAAAGGACCAAGTGGAGTTTACTACTCTATGGTGAGTCTTCAAAGAAGTGCAACAACCACTAGTGCTATTGATAATGAATTTTCCATTAACTAA 3756 0.3991 MCKMRVDQNHTIVNTKKKKKKNGSIRSIFMHADSLDWFLMVLGVFGAMGDGFTTPISVYIMSGIVNNVGGVLKMTPSTFIHNVNKYSLALTYLACASFFASFLGERQVARMKVKYLKAVLRQDITYFDLHVTSTSEVLTCVSSDSFVIQDVLSEKVPNFLMNFFRFLGSYIVAFALFWRLAIVGFPFVVLLVIPGLIYGKTMIRLARKIREESNKAGTIAEQAISSIRTVYSFVGESKTINAFSDALQGSVKLGLRQGLAKGLAIGSKGAVFAIWSFMCYYGSRLVMYHGAKGGTVFAVGSVICIGGSALGASLSELKYFTEACAAGERIMEIIKRVPNIDSENMAGEILERVSGEVEFDNVKFVYPSRPDSVILNDFCLKIPAGNTVALVGGSGSGKSTLISLLQRFYDPIEGEIRLDGVAINRLQLKWFRSQMGLVSQEPTLFATSIKENILFGKEDANEEDIVEAAKAANAHDFISQLPQGYNTRVGEKGVQISGGQKQRIAIARAIIKKPQILLLDEATSALDSESERKVQEALDKIVLDRTTIVVAHRLSTIRDAHVIIVLENGKIIEMGSHGELTQIDNGLYTSLVHFQQVEKSKNDTLFHPSILNEDMQNTSSDIVISHSISTNAMAQFSLVDEDNAKIAKDDQKLSPPSFWKLLALNLPEWKQACLGCLNATLFGAIEPLYAFAMGSMISIFFLTDHDEIKKKVVIYCLFFMGLAVFSLVVNIIQHYSFAYMGEYLSKRVKESMLSKILNFEVAWFDQDKNSTGVICSRLTKEANIVRSLVGDRMALLVQTISAVVIACTMGLIIAWRFAIILIVVQPIGIASFYTRLVLLKGMSKKAIKAQDETSKIAIEAISNLRTITAFSSQDQVIKMLKKAQEGPIRENIRQSWFAGIGLGCARSLTTFTRALEYWYGGKLVFDGYITSKQLFQTCLILANTGRVIADASSLTSDVAKGADAIGLVFSILNRNTKIDSDEMTAYMPQKLIGHIEFQDVYFAYPSRPNVMIFQEFSIKIDAGISTAVVGQSGSGKSTIMGLIERFYDPLKGIVMIDGRDIRSYHLRSLRNYISLVSQEPTLFNGTIRENIAYGAFDMTNEVEIIEAARIANAHDFIAGMKDGYDTWCGDRGVQLSGGQKQRIAIARAVLKNPKVLLLDEATSALDSQSEKVVQDALERVMVGRTSVVVAHRLSTIKNCNRIVVLNKGRVVEEGTHLCLLSKGPSGVYYSMVSLQRSATTTSAIDNEFSIN* 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0147 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 322 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g0147 1251 CDD ABC_MTABC3_MDL1_MDL2 357 595 - -
Gso19g0147 1251 SUPERFAMILY ABC transporter transmembrane region 659 974 IPR036640 GO:0005524|GO:0016021
Gso19g0147 1251 CDD ABC_MTABC3_MDL1_MDL2 995 1235 - -
Gso19g0147 1251 Pfam ABC transporter 375 524 IPR003439 GO:0005524
Gso19g0147 1251 Pfam ABC transporter 1014 1163 IPR003439 GO:0005524
Gso19g0147 1251 ProSitePatterns ABC transporters family signature. 496 510 IPR017871 GO:0005524
Gso19g0147 1251 Gene3D ABC transporter type 1, transmembrane domain 101 969 IPR036640 GO:0005524|GO:0016021
Gso19g0147 1251 SUPERFAMILY ABC transporter transmembrane region 28 338 IPR036640 GO:0005524|GO:0016021
Gso19g0147 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1235 IPR027417 -
Gso19g0147 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 679 960 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g0147 1251 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 25 1241 IPR039421 -
Gso19g0147 1251 Gene3D - 985 1245 IPR027417 -
Gso19g0147 1251 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 25 1241 - -
Gso19g0147 1251 ProSitePatterns ABC transporters family signature. 1135 1149 IPR017871 GO:0005524
Gso19g0147 1251 Gene3D - 355 627 IPR027417 -
Gso19g0147 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 330 - -
Gso19g0147 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 357 593 IPR003439 GO:0005524
Gso19g0147 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 995 1232 IPR003439 GO:0005524
Gso19g0147 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 662 978 - -
Gso19g0147 1251 Pfam ABC transporter transmembrane region 674 937 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g0147 1251 Pfam ABC transporter transmembrane region 41 298 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g0147 1251 SMART AAA_5 1022 1195 IPR003593 -
Gso19g0147 1251 SMART AAA_5 384 570 IPR003593 -
Gso19g0147 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 595 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0147 Gso-Chr19 1743595 1751086 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0147 674 1242 Calmodulin-binding Proteins AT2G36910 34.676 3.68e-100 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0147 K05658 - gmx:100808241 2404.79