Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0142 ATGAAGAGGGCGAGGGATGATATGTATCCTGCCTCTCAATTCAAACGCCCCTTTGCTTCGTCACGTGCTGATTCCTATGGACAAAACCAAGTCCCTGGAAGTGGAGGAGGAGGGGGAGGCGGCGGCGGAGGGGGAAGTGGCAATGGAGGTGGTGTTGGCGGGGGAGCAAATGCTTCCCAGAAGCTGACTACCAATGATGCTTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTACGACATGTTTCTTGAGGTCATGAAAGATTTCAAGGCCCAACGGACTGACACTGCTGGTGTCATAAAAAGGGTGAAGGAGTTATTCAAGGGGCACAACAATTTGATTTTTGGATTTAATACTTTCCTACCAAAGGGTTATGAGATAACGCTTGACGAGGATGAGGCTCCTCCAAAGAAAACTGTTGAATTTGAAGAAGCAATCAGCTTTGTGAACAAGATAAAGAAACGATTCCTAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAATATGTACCGCAAAGAGCATAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTTTTTAAGGACCATCGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATATTCGAAATTCATTGCAGCGCTTTAATGAGCGGGGTTCTATGGCCCCTATGATCCGCCAAATGCCAGCAGACAAGCAACGCTATCGACGAGACAGGCTTCCTTCTCATGATCGTGATATGAGTGCTGAACGCCCTGAGCTGGATGATGACAAGACAATGATGAACATACACAAGGAGCAGAGGAAGCGTGAAAGTAGGGAGAGGAGAATGCGTGATCAAGATGAGAGAGAACATGATCTTGATAACAACAGGGATTTGAACTTGCAACGCTTTCCTGACAAAAAAAAATCTGTCAAGAAAGCTGAAGGTTTTGGAATGGCTTCTGACTTTGCTTCTTATGAAGACAAAGATACCTTAAATAGCCCAGGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGGGAAGTTGAGCAGTTCAGATGATTACCAAACATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCGGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCACTGTCTACTGATGCTCATTTATCAAGATCATCAAAGTTGGAGGAAAAAGACAAAGAGCACAAGCGTGATTTGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGTACTCCCAGCTACCGGCTTCTGCCTGCAGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTCTTGAATGACCATTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTATTGGAGTCTGTGAGCTCAGCTGCTAAAAAAGCAGAGGAATTGTATAATAGCATCAATGAAAATAAAATCAGTGTGGAGACTCTGAACCGTATTGAAGATCACTTTACTGTTCTAAATTTAAGGTGTATTGAACGTCTATATGGTGATCATGGTCTGGACGTTATAGACATCTTGCGTAAAAACCCAACCCATGCCCTGCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAAGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAGATTTATGCTAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTACTTCAAACAGCAAGATTCAAAGAACTTGAGCACCAAATCTTTGGTTACTGAGATTAAAGAAATTAAAGAAAAGCAGCAGAAAGAGGACGATATTATTCAGTCTATTGCAGCTGGAAATAAACAGCCTCTAATTCCACATCTGGAATTTGAATATTCTGATGTTGGGATTCATGAAGACCTGTATAAACTTGTTCGTTATTCATGTGAAGAGTTATTCTCTAGTAAAGAGTTGTTAAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAGCCTATGCTTGGTGTTCCTTCCCAATCTCATGGGACAGAAAGGGCTGAGGACAGAAAAACTGGACATAATGTTTGCAATTTTGGTGCACCAAATGTAGGGGGTGATGGAAGTCCCCGGGAAGATACTCTTTCGATAAATTCAAGGGTACCAAAATCTGATAAGAATGAAGCTGATGGTAGAGTAACTGAAGTGAAGAATGTTCACTGGACTACTGTGGCGGCATCCAATGATAAAGAAAATGGGTCTGTTGGTGGTGAAATTGTTAGTAGAGATGATCCATTAATGGATAAAGGACAGAAAAATGTAGAATGCAATGATAAAGCCTCTGGATTTAGCAAACAATTTGCCTCTGGTGAAGAAGGAGCTAAAAACAATGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACTAACTTAGATGCGTCTTCAGGCTGTGCTCTTACTCCATCGCAACCTACTGATGTTGATGACTCTGTATCCAAGTCTCAGGGTGTTAATGTACCTTCGGTGGAGGGATGCGACATGGCAACTCCAGTACCAGTGGTCAATGGTGTTCTAAGTGAGAGCAGTAAAGTTAAAACTCATGATGAATCAGCTGGGCCCTGCAAAATTGAAAAGGAAGAGGGTGAATTATCACCAATTGGTGACTCTGAGGAGGATAACTATGTTGCTTATGGAGATTCAAATGTGCAGTCAATGGCTAAGTCAAAGCACAACGTTGAAAAAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATCTTGTCCCGAGGCTGGAGGTGACAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTCCGCGAAGATCATGAAGAGGAGGAAGATATAGAACATGACGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATTTGTGATGCACAGGTCGGAGGAGATGGCACATCTTTGCCATTGTCAGAGAGGTTCCTTTCATCCGTGAAACCCCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGATTCAAGGGTGTTCTATGGAAATGATGACTTCTATGTGCTTTTTAGACTTCATCAAGCTCTTTATGAGAGGATCTTATCAGCAAAAACACATTCAATGAGTGCAGAAATGAAATGGAAAGCAAAAGATGCTAGTTCACCAGATCCTTATTCAAGATTTATGAATGCATTGTACAACTTGCTTGATGGATCTGCCGAAAATGCCAAGTTTGAAGATGAATGCCGAGCAATTATTGGGAACCAGTCGTATGTGTTATTCACATTGGACAAGTTAATATACAAATTGGTCAGACAGCTTCAAACTGTTGCAACCGATGAGGTAGACAATAAGCTTCTCCAATTATATGAATATGAAAAGTCTCGGAAGTCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCATGAGGATAATATATATCGTTTACAATGTTCCTCTACCCCCTCGCGACTATTCATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGTTGTTTGCTGTTTCTATTGATCCAAATTTCTCTTTTTATCTGCACAGTGATTTTCTGTCTGTCTTTCCTAACAAAAAGGAGCCCCATGGCATCATACTGCATAGAAACAAACGCCAATATGGAAACTTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAGTTAACGGATTGGAATGTAAGATAGCTTGCAGCTCATCCAAGATTTCATATGTTCTTGACACACAAGATTTTTTCTTCCGACCAAGAAAGAAACGACGGACGCCATCAGGGACCACAACCTCCCAGTCTCGTAGGGACAGAGAGGAAAGATTCCGCAAATTGTTGGCACACTCGCAATTTGTATCTTCATGA 4206 0.4116 MKRARDDMYPASQFKRPFASSRADSYGQNQVPGSGGGGGGGGGGGSGNGGGVGGGANASQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIKRVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFLSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYIRNSLQRFNERGSMAPMIRQMPADKQRYRRDRLPSHDRDMSAERPELDDDKTMMNIHKEQRKRESRERRMRDQDEREHDLDNNRDLNLQRFPDKKKSVKKAEGFGMASDFASYEDKDTLNSPGMYSQAFSFCEKVKGKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLSRSSKLEEKDKEHKRDLDGAKEKERYREKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKKAEELYNSINENKISVETLNRIEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYSDVGIHEDLYKLVRYSCEELFSSKELLNKIMRLWSTFLEPMLGVPSQSHGTERAEDRKTGHNVCNFGAPNVGGDGSPREDTLSINSRVPKSDKNEADGRVTEVKNVHWTTVAASNDKENGSVGGEIVSRDDPLMDKGQKNVECNDKASGFSKQFASGEEGAKNNVSIAIRGENSLNRTNLDASSGCALTPSQPTDVDDSVSKSQGVNVPSVEGCDMATPVPVVNGVLSESSKVKTHDESAGPCKIEKEEGELSPIGDSEEDNYVAYGDSNVQSMAKSKHNVEKRKYQSRNGEDESCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEHDDVDGKAESEGEAEGICDAQVGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQALYERILSAKTHSMSAEMKWKAKDASSPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDNKLLQLYEYEKSRKSGKLNDSVYHANAHVILHEDNIYRLQCSSTPSRLFIQLMDNMNEKPELFAVSIDPNFSFYLHSDFLSVFPNKKEPHGIILHRNKRQYGNLDELSAICSAMEGVKVVNGLECKIACSSSKISYVLDTQDFFFRPRKKRRTPSGTTTSQSRRDREERFRKLLAHSQFVSS* 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0142 1401 MobiDBLite consensus disorder prediction 1008 1028 - -
Gso19g0142 1401 PANTHER SIN3B-RELATED 1 1383 IPR039774 GO:0003714
Gso19g0142 1401 MobiDBLite consensus disorder prediction 436 456 - -
Gso19g0142 1401 MobiDBLite consensus disorder prediction 233 317 - -
Gso19g0142 1401 Pfam Paired amphipathic helix repeat 167 211 IPR003822 GO:0006355
Gso19g0142 1401 Pfam Paired amphipathic helix repeat 83 127 IPR003822 GO:0006355
Gso19g0142 1401 Pfam Paired amphipathic helix repeat 368 412 IPR003822 GO:0006355
Gso19g0142 1401 Pfam Sin3 family co-repressor 481 573 IPR013194 -
Gso19g0142 1401 Gene3D Paired amphipathic helix 348 417 IPR036600 GO:0006355
Gso19g0142 1401 Gene3D Paired amphipathic helix 143 215 IPR036600 GO:0006355
Gso19g0142 1401 SMART hdac_interact2seq4b 479 579 IPR013194 -
Gso19g0142 1401 MobiDBLite consensus disorder prediction 988 1007 - -
Gso19g0142 1401 MobiDBLite consensus disorder prediction 939 1068 - -
Gso19g0142 1401 ProSiteProfiles PAH domain profile. 60 130 IPR003822 GO:0006355
Gso19g0142 1401 MobiDBLite consensus disorder prediction 438 456 - -
Gso19g0142 1401 MobiDBLite consensus disorder prediction 18 32 - -
Gso19g0142 1401 SUPERFAMILY PAH2 domain 349 415 IPR036600 GO:0006355
Gso19g0142 1401 SUPERFAMILY PAH2 domain 58 129 IPR036600 GO:0006355
Gso19g0142 1401 ProSiteProfiles PAH domain profile. 346 415 IPR003822 GO:0006355
Gso19g0142 1401 Coils Coil 552 572 - -
Gso19g0142 1401 MobiDBLite consensus disorder prediction 248 317 - -
Gso19g0142 1401 ProSiteProfiles PAH domain profile. 144 214 IPR003822 GO:0006355
Gso19g0142 1401 MobiDBLite consensus disorder prediction 942 963 - -
Gso19g0142 1401 MobiDBLite consensus disorder prediction 826 846 - -
Gso19g0142 1401 Gene3D Paired amphipathic helix 66 128 IPR036600 GO:0006355
Gso19g0142 1401 MobiDBLite consensus disorder prediction 1044 1059 - -
Gso19g0142 1401 Pfam C-terminal domain of Sin3a protein 1116 1363 IPR031693 -
Gso19g0142 1401 SUPERFAMILY PAH2 domain 141 213 IPR036600 GO:0006355
Gso19g0142 1401 MobiDBLite consensus disorder prediction 1 58 - -
Gso19g0142 1401 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1383 - -
Gso19g0142 1401 Coils Coil 440 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0142 Gso-Chr19 1664538 1674735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0142 45 141 WRKY Transcription Factor Family AT4G12020 57.143 2.66e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso19g0142 Sin3a_C 7.6e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0142 K11644 - gmx:100807181 2677.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0470 13 16763320 16773524 Gso19g0142 19 1664538 1674735 GST