Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0119 ATGGAGATTCAACAAAGCTTGAAGCTCACAATCCACAAGAAATGGCCATCATCACCCAAAAAACCACCTAAAGAAACAGAACCAATAACCACCACCCCAACTACTCCAAAGCTGAAATGGAAGAAAATCTTCTTCCAAACCAAAACCAAAACCCAAACTCAAACACCCCCAGAAGAATTCCTCTGCCCTATTTCTCATTCCCTCATGTTCGACCCAGTCATCGTCTCCTCCGGCCACTCCTTCGAACGCTCCTCCGTGGAAGCCTGCATAAATGTCAATTTTACCCCTCAACTCCCCGACGGCACCACCCCCGATTTCTCCACCCTCATCCCCAACCTCGCCCTCAAATCCGCCATCCTCAAATGGTGCCAATCCACCCACACACCACCCCCTCCACACCCCAACAACAACAACAACCACCTCGTACAAACCTTAATCTCCTCGAACCCAAGCCTCGTACCCACCTTAAACCCCCCGAACCCAAGCCTGGTACACACGAACCCCACCCCAGAGAAAATCTCCGACCAAGATTTGATTTTGAATTCTCTGAACGAAAACCCACCACTGACGAACCTCCGCCACCACGCGGAAACCGAGGTTCCGATAAGACGGACACATTTGTACACAAGTTCCGATGAATCCATAGCGACAACGTCAGCCTCAACGCCGCCACTTCAACTCTCCACGCGCCCAAGCTGCTGCTACTACTCTTCACCTTCGTCTTCAGAACTCGAACCCGCCACAACCCCAGAAGAAGAAGAAATCATGACAAAGCTCAAAAACCCTCAACACAGTGTAATCGAAGAAGCGCTTATCTCTCTCAGAAAACTAACGAGAATAAGAGAAGAAACAAGGCTTCAACTTTGCACTCCTCGGTTACTCTCCGCGTTACGTTCCCTCGTTTTGTCGAAGCACGTGAACGTTCAGGTGAACGCTCTTGCATCGGTGGTGAACCTATCGTTGGAGAAAAGTAATAAGGTGAGGATCGTGCGGTCGGGGATGGTTCCGCCGTTGATCGAGGTTTTGAAGTTTGGATCCTCTGAGGCGCAGGAGCACGGTGCGGGCGCGCTGTTTAGTTTGGCAATGGATGATGATAACAAAACCGCGATTGGGGTTTTGGGTGGTTTGGCTCCGTTGCTTCACATGCTCCGATCCGAGAGCGAGCGGACTCGGCATGACTCGGCTTTGGCGCTTTATCATTTGTCTTTGGTTCAGAGTAACCGGTCCAAGATGGTTAAACTCGGTTCGGTTCCGGTTCTTTTGAGCATGGTTAAATCGGGTCATATGATGGGTCGGGTTATGTTGATATTGGGGAATTTGGGTTCCGGGTCGGACGGCCGGGCCGCAATGTTGGATGCGGGTGTGGTGGAGTGTTTAGTGGGGTTGCTCAGTGGGCCCGAACCGGGGACCGGGTCAACTCGGGAGAGTTGTGTGGCAGTGATGTATGCACTGAGTCACGGCGGGTTGAGGTTTAAGGCGGTGGCGAAGGCGGCCGGGGTGGTGGAGGTGTTGCAAAAGGTGGAGAAGATGGGGAGTGAGAGGGCCAGGCGGAAGGTGAGGAAGATATTGGAGATAATGAGGACAAAGGAGGTGGAGGAGGAGGATGTGGATTGGGAGGAGTTGCTAGACTCGGGGTTGGGTTGCCGGACTCGGAGTAGACTCGGTGGTGGGTTGGATGAGTCAAGTGCAAACTCGGCCGAGTTTTGA 1707 0.5243 MEIQQSLKLTIHKKWPSSPKKPPKETEPITTTPTTPKLKWKKIFFQTKTKTQTQTPPEEFLCPISHSLMFDPVIVSSGHSFERSSVEACINVNFTPQLPDGTTPDFSTLIPNLALKSAILKWCQSTHTPPPPHPNNNNNHLVQTLISSNPSLVPTLNPPNPSLVHTNPTPEKISDQDLILNSLNENPPLTNLRHHAETEVPIRRTHLYTSSDESIATTSASTPPLQLSTRPSCCYYSSPSSSELEPATTPEEEEIMTKLKNPQHSVIEEALISLRKLTRIREETRLQLCTPRLLSALRSLVLSKHVNVQVNALASVVNLSLEKSNKVRIVRSGMVPPLIEVLKFGSSEAQEHGAGALFSLAMDDDNKTAIGVLGGLAPLLHMLRSESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLSMVKSGHMMGRVMLILGNLGSGSDGRAAMLDAGVVECLVGLLSGPEPGTGSTRESCVAVMYALSHGGLRFKAVAKAAGVVEVLQKVEKMGSERARRKVRKILEIMRTKEVEEEDVDWEELLDSGLGCRTRSRLGGGLDESSANSAEF* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0119 568 SUPERFAMILY ARM repeat 257 523 IPR016024 -
Gso19g0119 568 Gene3D - 248 525 IPR011989 -
Gso19g0119 568 Pfam U-box domain 57 125 IPR003613 GO:0004842|GO:0016567
Gso19g0119 568 MobiDBLite consensus disorder prediction 1 33 - -
Gso19g0119 568 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 333 375 IPR000225 GO:0005515
Gso19g0119 568 SMART Ubox_2 59 122 IPR003613 GO:0004842|GO:0016567
Gso19g0119 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 130 IPR013083 -
Gso19g0119 568 SUPERFAMILY RING/U-box 50 128 - -
Gso19g0119 568 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 37 557 - -
Gso19g0119 568 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842|GO:0016567
Gso19g0119 568 SMART arm_5 322 362 IPR000225 GO:0005515
Gso19g0119 568 SMART arm_5 281 321 IPR000225 GO:0005515
Gso19g0119 568 SMART arm_5 363 403 IPR000225 GO:0005515
Gso19g0119 568 SMART arm_5 443 486 IPR000225 GO:0005515
Gso19g0119 568 Pfam Armadillo/beta-catenin-like repeat 363 402 IPR000225 GO:0005515
Gso19g0119 568 PANTHER U BOX DOMAIN-CONTAINING 37 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0119 Gso-Chr19 1295440 1297664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0119 49 568 U-box Gene Family AT5G40140 55.009 4.00e-175 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0119 - - gmx:100798675 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0119 19 1295440 1297664 Gso19g0119 19 1295440 1297664 ECH
Gso13g0483 13 16914470 16916875 Gso19g0119 19 1295440 1297664 GST
Gso19g0119 19 1295440 1297664 Gso18g2069 18 53646134 53651172 PCT
Gso19g0119 19 1295440 1297664 Gso9g1986 9 44275497 44280445 PCT