Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0112 ATGCATGGGTGCGGTCGTGACCAGTCGAAACACAATCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGATGGACGCAAGATTCGCGCTGGTGATTGTGCACTTTTCAAGGCACCCAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGTTAACATTTGATAAAGAAGAAAGTCCGAGTTTAGAAGTGAATTGGCTATACCGACCTGCTGATTTGAAGCTTGCTAAAGGGATTGTACTGGAAGCTGCTCCAAACGAAGTTTTCTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAGGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTAGACGAGTATATGACATTGAGAACAATTGTTTATGGTGGTTAACTGATAAGGATTACCTTAATGAACGACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAGCCCTTGAATGGTCCAACATCAACACAGTCATTGAAATCTGGTTCTGACAACGTTCAAAATAGTTCTTCTTTTGGTGCACAGGGTAAGGGGAAAAAAAGAGAGCGGGGTGATCAGGTTTCTGATTCATCTAAAAAGGAGCGGTTATTTAAGGTAGAAGATGGAGATTCTGGTCAATTTAGATTGGAAAGCATGTTAAAGTCTGAGATTGCTAAAATAACTGATAATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAGACTGGTACAGCTTATGCAACCTGATAGTGGTGATAAAAAAATAGATTTGGCAGGGCGAATGATGCTTGTCGATGTAATTGCACTTACGGACCGGTATGAGTGTCTATGCGGGTTTGTACAACACAGGGGTTTGCCTGTGTTGGACGAATGGCTGCAGGAGGTCCACAAGGGCAAAATTGGTGAAGGAAATATGCCTAAGGAAAGTGATAAGTCAGTTGATGAGTTTTTGTTAGCTTTACTTCGTGCATTAGATAAGCTTCCTGTGAACCTTCATGCACTGCAAACCTGTAATGTTGGAAAGTCTGTTAATCATTTACGCACCCACAAAAATTATGAAATTCAGAGGAAAGCTAGGAGTTTAGTGGACACATGGAAGAGACGTGTGGAAGCTGAAATGAATATGAATGATTCGAAGTCTGGTTCAAACCGTACCATGTCTTGGCCAGCAAAGTCAGCAAATTCTGAGTCTCCTCAGGTTGGAAATAGGAAAACAGGAGGATCCTCTGATAATGTTGCAAAGAGCTCTTCAGTTCAACCCTCAATATCTAAAAATTCCCAATCTAAGTTAAGTTCTGGAGAAGCACTGTCCAAGTCCTCTTCATCTCCTGGCTCAATTAAGCTAATGACTACCTCAGCGGTCAGTAACTCAAAAGATCAAAACAGTAAAGTCTTGGTTGGAGCTGCAACGTCAGATCTGCCTCTGACACCTATCAAGGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAATAACAGTATATCTTGTTCTAGTGAACATGCTAAAACTATTGGTTCCAGCAGGGAAGATTCGAAGAGCTCCACTGCAGTGTCAGCGAGTGGGGGCAAAATTCCTGGTGGTGCTTCTCGAACACGCAAGTCCAGCAATGGGCTACATGTTACTGGTGTTGCAGTAGGTCCGAAGGAGCACAGCTCTGCAAAAAATTCAACTAGGAATTCACCTTCTGAAAAAGTTTCTCCAACTCGAGTCCCCCATGAAAAATCAGCTGACCAGCCCCTTACTGATCAAGGGAATAATCAGCGATTGATTCTCCGGTTGCCAAACACTGGTCACAGTCCTTCAAGGGGAGCTAGCGGTGGCTCTTATGAAGAACCAGGTATCACGTGCAGCAAAGCTTCTTCTCCTGCTGACAGGAATGAGAATCAGGACAGAAGAATGAAAACTAGACCTGAGTGTTTGCTGACCCATGTGTCAAATATGATGAATGAGGCATGTGATGCTAGTGAAGCTTTGCTTGGTGTTGATGAAGGTAAGGGCCCTCAAACGGTTGATGAGCGATGCAGGGCTAATGAAGATGGTGATAAGGTAGCAGAATCATCAAAACCGGCTAGTTTGTCATCTGGATTTGTTTCCAGATCAGGGCAGACTTATGATTTAAGCCCCATGAATGCATTAGTTGAAAGCTGTGTGAAAATTTCTGAAGCAAGTGCATCCGTGTCCCATGGAGATGATGGGATGAACCTACTAGCTACTGTGGCTGCAGGGGAAATATCAAGATCTGAAAATGCCTCACCTATGGTATCCCCTGAGAGAAAGTCTCCTCCTGCAGATGAATTGAGCTCAGGCAATGATTTCAAGTTAAAACATTCTGGTGAAGCAGCTGTTTGCTCTCTTTCACAGTCGGATGGTGGGGCTACTGCCGAGCATCCTTTGAACATATTTGATTCATTGCAGATAAAAAATGATTTGAGGCATCCTGCTGCAACTTCAGGAGATGGTGACACCATTTCATCCAGTTGTGTTGAGAGAAGTGGTGATGGGAGATCGCAGATAAATAGCTCCCCTACAGATTTCTTACAAGCTGAAGGTCCATGCTTACGGCCTGAAACCAAAGAGGATACTTCTGAAACTATATTGCCAATTAAAAAGGAGACTAATGCAGACCCTGGAGACTGTAAATTAAAGTCAAGGACTTCTTTTGATGATGATCAGAAGGTTGATCACATGAATGAGGAAACCGCTGAGGATGAGAAAATGTTGGTTCCAAAAGCTGTTGCAAGTGTTAAGTCTGAAAATGAATCGGGTGAAAAACATCCTGAGTTATCCTCAGGTGTGGATAATGAGAACCAGATTAGTGCAGAGAAATCAACAGGTACTGGTATACTAGTGCAAAAGGCCTCTCCAGTTTCAGAAAACTGTGAGTCTTTGTATTTAAAAAAGGAGTCACCTACTTCTGGTAATGCTGTAATGGTATCCAGGGATGAAAATGCTGATGACACGAAGTCAGTTGTGATTGAGCCTGATGAAAGAAGAACAGAGCAGGATTTATCAGTTTCAGATGATGTTAATGAACGTGCTGATACTATGGGTAGAAAAGAGGCTATTGGTCAGTGTTCTGGCTCATCAGTTCATCCAGATTTACCAACAATGCCTAGGGAAGAGAATGATGCATTTAAAGCATCTGCTGAGCAAAAGTTGGATACAAATAAATCTGAGGTTGCAGGAGAGAGGCATGCATGTTCTGCTGCTGGGTCTGATACTGCTGTAAAACTTGACTTCGATTTAAACGAAGGCTTTCCTGTTGATGATGTAAGCCAAGGGGAGATTGCTAGACAGGAAGATCCTACCACATCATCTGCAGTTCATGTTCCTTGCCCAATGCCTTTCCCTATGACATCCATCTCTGGGGTCTTCCATGCTTCAATTACAGTGGCATCTGCTGCCAAAGGGCCGGTTGTTCCACCTGAAAACCCATTGCGGATTAAGGGGGAGCTTGGATGGAAAGGGTCTGCTGCTACCAGTGCATTTCGGCCAGCTGAACCTAGGAAAAATGCTGAGACACCGCCCACTACTAATGATATTGCTTCTGTTGATGTCACTTCTATCAAACAAGGTCGCCCTCCCTTAGATTTTGATTTAAATGTGGCAGATGAAAGATGTTTTGAGGATGTGGGTTCGTGTGCTTCTTTAGAAGCTGGGCCACATGATCGTAGCACTGGGGGATTTGATTTAAATAAATTTGATGAGACTCCTGAAATTGGTACTTTCTTGATAAGCAAACTGGATATTCCTTCTTTACCAAGTAAGCCTTCGTTGTCCAGTGGGTTATCTAATGGCGGAAGTGTCTCAAGAGACTTTGACTTAAATAATGGACCAGGCCTTGATGAAGTTGGGAGTGAAGTCCCAACACGTAGTCAGCCAATGAAAAGTACTGTACCATTTCCAACTGCTGTTCATGGCACGAGAGCAAACAATGCTGAATTTGGGAATTATTCTGCATGGTTTCCTCCTGGCAATACTTATTCTGCAATTACTGTCCCACCACTTCTGTCCGGCAGAGGGGAGCAGAGTTATGTTGCTGGTGCTGGGGCGCAACGTATAATGGGTCCTACAGGTAGTGCTCCTTTTGGTCCTGAAATCTACAGGGGACCAGTGCTTCCATCCTCTCCAGCTGTTGCTTATCCACCTACTACGCCTTTTCCCTATCCAGGATTTCCATTTGAAACCAATTTTCCATTATCTTCAAACTCTTTGTCTGTTTGTTCAACAGCATTTATGGATTCGTCAACTGTGGGTGGATTATGCTTTCCTACCATGCCCTCACAGCCAGTTGGGTCTGGTGGTGTTGTTTCATCTACGTATCCCCGTCCATATGTTATGAGTCTTCCAGGTGGTACAAGTAATGTGATTCCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCGGGCCCCGGTGGTACGGATACTGAACGGAGAGATGATAGATTGCCTTCTGGATTGAGGCAAATGTCTGTCCCCAATTCACAGGCCTCGATGGAGGACCACTTGAAGATGTTTCAGATGGCAGGTGCATTGAAAAGAAAAGAACCTGATGGTGGTTGGGAGGGAGCCGAGAGATTCGGTTACACGCAACATTCATGGCAGTAG 4686 0.4413 MHGCGRDQSKHNRHMWPVPANATTDGRKIRAGDCALFKAPRDSPPFIGIIRKLTFDKEESPSLEVNWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNERQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSGSDNVQNSSSFGAQGKGKKRERGDQVSDSSKKERLFKVEDGDSGQFRLESMLKSEIAKITDNKGGLVDFEGVERLVQLMQPDSGDKKIDLAGRMMLVDVIALTDRYECLCGFVQHRGLPVLDEWLQEVHKGKIGEGNMPKESDKSVDEFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNYEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRTMSWPAKSANSESPQVGNRKTGGSSDNVAKSSSVQPSISKNSQSKLSSGEALSKSSSSPGSIKLMTTSAVSNSKDQNSKVLVGAATSDLPLTPIKEERSSSSSQSQNNSISCSSEHAKTIGSSREDSKSSTAVSASGGKIPGGASRTRKSSNGLHVTGVAVGPKEHSSAKNSTRNSPSEKVSPTRVPHEKSADQPLTDQGNNQRLILRLPNTGHSPSRGASGGSYEEPGITCSKASSPADRNENQDRRMKTRPECLLTHVSNMMNEACDASEALLGVDEGKGPQTVDERCRANEDGDKVAESSKPASLSSGFVSRSGQTYDLSPMNALVESCVKISEASASVSHGDDGMNLLATVAAGEISRSENASPMVSPERKSPPADELSSGNDFKLKHSGEAAVCSLSQSDGGATAEHPLNIFDSLQIKNDLRHPAATSGDGDTISSSCVERSGDGRSQINSSPTDFLQAEGPCLRPETKEDTSETILPIKKETNADPGDCKLKSRTSFDDDQKVDHMNEETAEDEKMLVPKAVASVKSENESGEKHPELSSGVDNENQISAEKSTGTGILVQKASPVSENCESLYLKKESPTSGNAVMVSRDENADDTKSVVIEPDERRTEQDLSVSDDVNERADTMGRKEAIGQCSGSSVHPDLPTMPREENDAFKASAEQKLDTNKSEVAGERHACSAAGSDTAVKLDFDLNEGFPVDDVSQGEIARQEDPTTSSAVHVPCPMPFPMTSISGVFHASITVASAAKGPVVPPENPLRIKGELGWKGSAATSAFRPAEPRKNAETPPTTNDIASVDVTSIKQGRPPLDFDLNVADERCFEDVGSCASLEAGPHDRSTGGFDLNKFDETPEIGTFLISKLDIPSLPSKPSLSSGLSNGGSVSRDFDLNNGPGLDEVGSEVPTRSQPMKSTVPFPTAVHGTRANNAEFGNYSAWFPPGNTYSAITVPPLLSGRGEQSYVAGAGAQRIMGPTGSAPFGPEIYRGPVLPSSPAVAYPPTTPFPYPGFPFETNFPLSSNSLSVCSTAFMDSSTVGGLCFPTMPSQPVGSGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGGTDTERRDDRLPSGLRQMSVPNSQASMEDHLKMFQMAGALKRKEPDGGWEGAERFGYTQHSWQ* 1562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0112 1561 MobiDBLite consensus disorder prediction 176 204 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 699 720 - -
Gso19g0112 1561 Gene3D - 20 241 IPR043151 -
Gso19g0112 1561 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 302 406 IPR035441 -
Gso19g0112 1561 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 1561 - -
Gso19g0112 1561 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 261 396 IPR035441 -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 1480 1519 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 1004 1041 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 165 224 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 395 481 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 1279 1321 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 498 655 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 573 589 - -
Gso19g0112 1561 ProSiteProfiles TFIIS N-terminal domain profile. 309 395 IPR017923 -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 834 958 - -
Gso19g0112 1561 ProSiteProfiles BAH domain profile. 27 142 IPR001025 GO:0003682
Gso19g0112 1561 MobiDBLite consensus disorder prediction 1480 1497 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 1 22 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 841 869 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 986 1062 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 205 224 - -
Gso19g0112 1561 SMART TFS2_5 315 394 IPR003617 GO:0005634
Gso19g0112 1561 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1561 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 1182 1203 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 896 929 - -
Gso19g0112 1561 SMART BAH_4 27 142 IPR001025 GO:0003682
Gso19g0112 1561 Pfam BAH domain 29 134 IPR001025 GO:0003682
Gso19g0112 1561 MobiDBLite consensus disorder prediction 398 481 - -
Gso19g0112 1561 CDD TFIIS_I 317 393 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 500 543 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 1541 1561 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 769 795 - -
Gso19g0112 1561 Pfam TFIIS helical bundle-like domain 343 392 IPR017923 -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 986 1001 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 601 626 - -
Gso19g0112 1561 MobiDBLite consensus disorder prediction 1279 1295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0112 Gso-Chr19 1193166 1200391 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso19g0112 BAH 9.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0112 - - gmx:100796021 2994.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0112 19 1193166 1200391 Gso19g0112 19 1193166 1200391 ECH
Gso13g0493 13 17049749 17057122 Gso19g0112 19 1193166 1200391 GST