Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0102 ATGTCAGAAAACATGTATCCTCCTAGGTTGTTGGTTTTTGACCATACCCATTTGAAGATGGCATGGGTTAAGCATCAAATCCGGCAAAAAGATGGTTACTTGAGCTACTCACCACCCCTTTTGTCTTCATCTTTTTCTTCACCTCCATACCCTCTTGGTGCTACTTTCCACAAGGATTCATCATTGCCTTCTTCAACACCACCACCACCACCACCATCATCTGGCACTAGAATTAGTCCTGCTGTTCTATTCATCATAGTGGTTCTTGCTGTCTTGTTTTTCATCTCTGGCCTCCTCCACCTGCTTGTTAGATTTCTCATAAAGCACCCTTCTTCTGCATCTGCTCAATCCAACAACAGACACCAAGAACTTTCCACATCTGATGCTCTTCAAAGGCAGCTTCAGCAGCTCTTCCACCTCCATGACTCTGGCTTGGATCAGGCTTTCATTGATGCTCTTCCTGTTTTCCAGTACAAGGAGATTGTGGGGTTGAAGGAGCCTTTTGACTGTGCTGTTTGCTTGTGTGAGTTTTCTGAAAAGGATAAGCTCAGGTTGTTGCCTATGTGCAGCCATGCCTTTCACATAAGTTGTATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACACTTCTCACTCAAGGGTTTTCCGTTGAGAATCCTATATTTGACTTCGATGATCTTAGGGAGGATGAGATGTGTCCTTGGAATGGGGAGAATGGATTCAATACCCGGCAGAAAACAGTTGTGGTTGAAGAAAGTGTGGAGAAAGAGAAAGGTGTTTTCCCTGTGAGGCTTGGGAAATTCAAGAAGCTAAGTAGTGTGGAGGGGGGTGGGGAGAGTGAAGTGGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTTCTCAATGGGGTCTTACCAATATGTGGTTGGAAATTCAGACCTAAGGGTGGCTTTGAACCATGATGAAATTAGTAAAGGTCAAGTCACAAGGCTCAACAAAGGAATGGAACTTGATGATGGGAAGCTTTCAGTGGAGGATGTGGAAGGAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGTTTTTCTGTGTCCAAAATCTGGTTGTGGCCAAAGAAGGGGAAATTGCCTACTTCTTTGGATGGTCAAATTGGCATGCCAATGCCATCTTTTCTAAACACAGATTTTCCAAGGATGAGGGATACAGAAGGGGCATGA 1218 0.4417 MSENMYPPRLLVFDHTHLKMAWVKHQIRQKDGYLSYSPPLLSSSFSSPPYPLGATFHKDSSLPSSTPPPPPPSSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSASAQSNNRHQELSTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTQGFSVENPIFDFDDLREDEMCPWNGENGFNTRQKTVVVEESVEKEKGVFPVRLGKFKKLSSVEGGGESEVGETSSSNLDARRCFSMGSYQYVVGNSDLRVALNHDEISKGQVTRLNKGMELDDGKLSVEDVEGKKISSVSKGDSFSVSKIWLWPKKGKLPTSLDGQIGMPMPSFLNTDFPRMRDTEGA* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0102 405 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 58 380 - -
Gso19g0102 405 SMART ring_2 170 211 IPR001841 -
Gso19g0102 405 Pfam Ring finger domain 169 212 IPR001841 -
Gso19g0102 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 58 380 - -
Gso19g0102 405 SUPERFAMILY RING/U-box 149 218 - -
Gso19g0102 405 CDD RING-H2_PA-TM-RING 169 212 - -
Gso19g0102 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 218 IPR013083 -
Gso19g0102 405 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0102 Gso-Chr19 1110296 1113135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0102 75 375 C3H Transcription Factor Family AT2G18650 43.598 4.81e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0102 - - gmx:100787206 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0102 19 1110296 1113135 Gso19g0102 19 1110296 1113135 ECH
Gso13g0500 13 17131412 17133411 Gso19g0102 19 1110296 1113135 GST