Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0093 ACATGTTTGGTGCTAAAAGTGTTGACAATGACAGTTATTATAACAGTGGTGTTAATATTTGTTGGATTTGTGTTCCTGGTCCTACTTCATGTTTGTTTTTCCGAGAGAGCTAGGAGAGGATCAATGGTTGAGAGGAGAGCAAATGGGGGAAGAAGCATGTCTATAGATGACTTGGAGAAGCTTCCATGTTATGATTATGTTGACAATTCCAAAGGCAACAACACAAGCAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAACCTAATCACAGGAGATAAGTGCAGATTCTTACCTGTGTGCAAGCATAGTTTTCATGCCCAATGTGTGGACGCATGGCTTCTAAAGACACCCATTTGTCCAACTTGCAGGTGTAATGCTCATTCTCATAGTGGAAACCAAGTTGTAGGTAACAACAATGACTACTCTGTTGCACCAAATAGTGGGTCTAGGGAGAGCCAAAGTCAGCAACATGACAATATGGTTTTGGTGCAGTTGAGAGAAAGCCAAGAAAATGTTCCATCCAGAAATGTTGACAGAGAAAATCCAACATTAGGAAGTCACAACTTGGTCAGAGAGGAGTAG 582 0.4192 TCLVLKVLTMTVIITVVLIFVGFVFLVLLHVCFSERARRGSMVERRANGGRSMSIDDLEKLPCYDYVDNSKGNNTSSPVDCAVCLENLITGDKCRFLPVCKHSFHAQCVDAWLLKTPICPTCRCNAHSHSGNQVVGNNNDYSVAPNSGSRESQSQQHDNMVLVQLRESQENVPSRNVDRENPTLGSHNLVREE* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0093 193 SMART ring_2 81 122 IPR001841 -
Gso19g0093 193 SUPERFAMILY RING/U-box 66 132 - -
Gso19g0093 193 Pfam Ring finger domain 80 123 IPR001841 -
Gso19g0093 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 128 IPR013083 -
Gso19g0093 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 151 - -
Gso19g0093 193 ProSiteProfiles Zinc finger RING-type profile. 81 123 IPR001841 -
Gso19g0093 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 151 - -
Gso19g0093 193 MobiDBLite consensus disorder prediction 135 183 - -
Gso19g0093 193 MobiDBLite consensus disorder prediction 135 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0093 Gso-Chr19 1029886 1030783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0093 8 123 C3H Transcription Factor Family AT5G42200 32.000 1.14e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0093 - K15692 gsj:114400372 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0093 19 1029886 1030783 Gso19g0093 19 1029886 1030783 ECH