Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0090 ATGGAGTCTGGACGGATTTTCTTTGGTGCCTCTGCTTCAAGCGGCAACAACATGCTCTTTCTCGGCAACACTGAACTTGCTTTTCGAGGGAGATCGATGATGAGCATGGAGGAAGCCTCGAAGAGGCGACCTTTCTTCACCTCACCGGATGAACTGTATGATGAAGAGTATTATGAGAAGCAGTCGCCGGAGAAGAAGCACCGCCTCAGTTCCGAACAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAATTGGAGCCTGAGAGGAAGACCCAGTTGGCTAAGAAGCTGGGATTGCAGCCCAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAGCAACTTGAAAGGGATTTTGATGTTCTCAAGTCTTCATACGATACCCTACTTTCATCCTATGATTCAATTATGAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAAAAGCTTCAAGTTCAAGCTAAAGAGGTGCCTGAGGAACCATTATGTGACAAGAAAGTTGATCCAATTCCAGTAGATGAAGATATGGCTCCGATTTTCGGCACAAGGGTGGAGGACCACCTGAGTAGTGGGAGTGTTGGAAGTGCGGTGGTGGATGAGGGTAGTCCACAGGTGGTTGTTGACAGTGTTGATTCATACATTCTAGCTGACAACTATGGTGGATGTGTGGGCCCGGTCGAGAGGGTTCAGTCGGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTTACTTGGATGTGTTTGTGGTATCTGAAACTGAGCACCAAAACCATGAGGAAGGAGAGACATTGGGTTGGTGGACTAATATGTATTATGTTGGATAA 855 0.4772 MESGRIFFGASASSGNNMLFLGNTELAFRGRSMMSMEEASKRRPFFTSPDELYDEEYYEKQSPEKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDVLKSSYDTLLSSYDSIMKENEKLKSEVVSLNEKLQVQAKEVPEEPLCDKKVDPIPVDEDMAPIFGTRVEDHLSSGSVGSAVVDEGSPQVVVDSVDSYILADNYGGCVGPVERVQSEEEDGSDDGRSYLDVFVVSETEHQNHEEGETLGWWTNMYYVG* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0090 284 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Gso19g0090 284 SMART HOX_1 62 124 IPR001356 GO:0003677
Gso19g0090 284 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355|GO:0043565
Gso19g0090 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 257 IPR045224 GO:0003700
Gso19g0090 284 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Gso19g0090 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 257 - -
Gso19g0090 284 SUPERFAMILY Homeodomain-like 51 122 IPR009057 -
Gso19g0090 284 Coils Coil 140 167 - -
Gso19g0090 284 CDD homeodomain 65 121 IPR001356 GO:0003677
Gso19g0090 284 Gene3D - 58 127 - -
Gso19g0090 284 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Gso19g0090 284 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Gso19g0090 284 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0090 Gso-Chr19 981235 984975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0090 1 277 Homeobox Transcription Factor Family AT3G01470 56.184 3.89e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso19g0090 Homeodomain 9.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0090 K09338 - gmx:100813420 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0090 19 981235 984975 Gso19g0090 19 981235 984975 ECH