Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0079 ATGGCAAGCACTCCTAGCATTCCATCACACATAAAAGCTTGGGTTTATTCTGAATATGGGAACACAGAAGAGATTCTCAAATTTGAATCTAACATACCTATACCAGACATCAAGGAAGACCAAGTGCTCATCAAGGTTGTGGCTGCAGCCCTTAACCCAATAGATTATAAGAGGGCTCATGGGTTTTTGAAGAACACTGATTCTCCCTTTCCTACTGTTCCGGGGTACGATGTTGCTGGTGTGGTGGTCAAAGTGGGAAGTCAAGTGAGTAAATTCAAGGTTGGGGATGGGGTTTATGGTGACATCAATGAGGATCCTGTGAATAATCCAAAGGCCATTGGGTCTTTGGCAGAGTACACTGCTGTTGAAGAGAAAGTGTTGGCTCACAAACCCTCCAATTTGAGCTTTGTTGAAGCTGCTAGCCTTCCTTTGGCCATCATAACTGCTTATCAAGGATTTGAAAAAGTTGAGTTTTCTGCTGGCAAATCTATACTTGTTCTTGGGGGTGCTGGTGGAGTTGGATCCCTTGTTATTCAGCTCGCGAAGCACGTTTTTGGCGCATCAAAGGTTGCAGCCACAGCTAGTACTGCAAAACTGGATTTGTTAAGGAACTTGGGAGCAGACTTAGCTATTGATTATACTAAGGAGAATTTTGAAGAACTGGAAGAGAAGTTTGATGTAGTGTACGACACAGTAGGAGAAAGTGAGACTGAGAAGGCATTGAAGGCTGTTAAAGAAAGTGGCAAAGTTGTGACAATAGTGAGATTTGGACATCCTGAAGCTATATTCTTCATACGAATTTCAGATGGTACTGTGTTGGAGAAACTAAAACCTTACTTAGAGAGTGGGAAGGTGAAGCCAATATTGGACCCTAAGAGTCCCTATCCATTTTCTCAGACCGTGGAGGCATTTGCACACTTGAAGACTAATAGAGCCATTGGGAAAGTGGTCATACATCCCATTCCATAA 969 0.4293 MASTPSIPSHIKAWVYSEYGNTEEILKFESNIPIPDIKEDQVLIKVVAAALNPIDYKRAHGFLKNTDSPFPTVPGYDVAGVVVKVGSQVSKFKVGDGVYGDINEDPVNNPKAIGSLAEYTAVEEKVLAHKPSNLSFVEAASLPLAIITAYQGFEKVEFSAGKSILVLGGAGGVGSLVIQLAKHVFGASKVAATASTAKLDLLRNLGADLAIDYTKENFEELEEKFDVVYDTVGESETEKALKAVKESGKVVTIVRFGHPEAIFFIRISDGTVLEKLKPYLESGKVKPILDPKSPYPFSQTVEAFAHLKTNRAIGKVVIHPIP* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0079 322 Pfam Zinc-binding dehydrogenase 205 318 - -
Gso19g0079 322 Gene3D - 153 269 - -
Gso19g0079 322 SMART PKS_ER_names_mod 21 318 IPR020843 GO:0016491
Gso19g0079 322 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 1 322 IPR044626 GO:0016628
Gso19g0079 322 SUPERFAMILY GroES-like 8 166 IPR011032 -
Gso19g0079 322 Gene3D - 18 318 - -
Gso19g0079 322 Pfam Alcohol dehydrogenase GroES-like domain 40 101 IPR013154 -
Gso19g0079 322 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 1 322 - -
Gso19g0079 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 134 262 IPR036291 -
Gso19g0079 322 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 161 182 IPR002364 GO:0008270|GO:0016491
Gso19g0079 322 CDD MDR_like_2 12 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0079 Gso-Chr19 874469 876952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0079 1 317 Monolignol Biosynthesis Gene Families AT1G72680 24.786 1.30e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0079 K18980 - gmx:100793908 592.423