Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0077 ATGGCAAGCATTTCTAGCATTCCATCACACATAAAAACTTGGGTTTATTCTGAATATGGGAACACAGAAGAGATTCTAAAATTTGATCCCAACGTACCTATACCAGACATCAAGGAAGACCAGGTGCTCATCAAGGTTGTGGCTACAGCTCTTAATCCTGTGGATTATAAGAGGGCTCTTGGCTATTTCAAGAACACTGACTCTCCCTTACCTAGTGTTCCGGGGTACGATGTTGCTGGTGTGGTGGTAAGAGTGGGAAGTAAAGTGAGGAAATTCAAGGTTGGGGATGAGGTTTATGGTGATATCAATGAGTATGCTGTGAATAATCCAAAGACCATTGGGACTTTGGCAGAGTACACTGCTACTGAAGAGAAATTGTTGGCTCACAAACCCTCCAATTTGAGCTTTATTGAAGCTGCTAGCCTTCCTTTAGCTATCATCACTGCTTATCAAGGACTTGAAAGAGTTGATTTTTCTGCTGGAAAATCTATACTTGTTCTAGGAGGTGCTGGTGGAGTTGGATCCCTTGTTATTCAGCTCGCCAAGCACGTTTTTGGCGCATCCAAGGTTGCAGCTACTGCTAGTTCCGCAAAACTGGATTTATTAAGGAACTTGGGAGCAGACTTTCCTATTGATTACACAAAGGAGAATTTTGAAGAGCTTGCAGAGAAGTTTGATGTAGTGTACGATACAATAGGGCAGAGTGACAAGGCATTGAAGGCTATCAAAGAAGGGGGGAAAGTTGTGACAATAGCACCACCAGCAACTCCACCTGCTATCCCATTCTTTCTCACTTCAGATGGTGCTGTGTTGGAGAAGTTACAACCTCACTTAGAAAGTGGGAAGGTGAAGCCAGTATTGGATCCTAAGAGTCCCTTTCCATTTTCTCAGATTGTGGAAGCATATTCATACTTGAAGACAAATAGAGCCATTGGGAAAGTAGTCATACATCCCATCCCTTGA 963 0.4299 MASISSIPSHIKTWVYSEYGNTEEILKFDPNVPIPDIKEDQVLIKVVATALNPVDYKRALGYFKNTDSPLPSVPGYDVAGVVVRVGSKVRKFKVGDEVYGDINEYAVNNPKTIGTLAEYTATEEKLLAHKPSNLSFIEAASLPLAIITAYQGLERVDFSAGKSILVLGGAGGVGSLVIQLAKHVFGASKVAATASSAKLDLLRNLGADFPIDYTKENFEELAEKFDVVYDTIGQSDKALKAIKEGGKVVTIAPPATPPAIPFFLTSDGAVLEKLQPHLESGKVKPVLDPKSPFPFSQIVEAYSYLKTNRAIGKVVIHPIP* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0077 320 SMART PKS_ER_names_mod 21 316 IPR020843 GO:0016491
Gso19g0077 320 CDD MDR_like_2 12 316 - -
Gso19g0077 320 Gene3D - 153 267 - -
Gso19g0077 320 Gene3D - 18 316 - -
Gso19g0077 320 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 1 320 - -
Gso19g0077 320 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 161 182 IPR002364 GO:0008270|GO:0016491
Gso19g0077 320 Pfam Zinc-binding dehydrogenase 205 316 - -
Gso19g0077 320 Pfam Alcohol dehydrogenase GroES-like domain 40 101 IPR013154 -
Gso19g0077 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 134 260 IPR036291 -
Gso19g0077 320 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 1 320 IPR044626 GO:0016628
Gso19g0077 320 SUPERFAMILY GroES-like 8 166 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0077 Gso-Chr19 861878 864286 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0077 39 263 Monolignol Biosynthesis Gene Families AT4G37980 25.490 1.73e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0077 K18980 - gmx:100791274 581.252