Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0060 ATGGACAAAAAACCATGCGACTCATCTCATGATCCAGAAGTGAGAAAGGGACCATGGATCATGGAAGAAGACTTGATCTTGATAAACTATATTGCAAATCACGGTGAAGGTGTTTGGAATTCTTTAGCCAAAGCTTCTGGTCTTAAACGAACGGGAAAGAGTTGTCGACTCCGTTGGCTAAACTACCTTCGTCCTGATGTTAGAAGAGGAAACATTACACCTGAAGAACAGCTTTTGATCATAGAACTTCATGCAAAGTGGGGCAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGACAATGAGATTAAGAACTTCTGGAGAACTAGGATCCAGAAGCACATTAAGCAAGCTGAGACTTCACAACAACATGGTAATTCATCAGAGAATAGTAATAATGATCATCAAGCAAGCAATAGCACTAGCAAGGTGTCCACCATGGCACATCCAAATGAGACTTTCTCTCCACCCTCATACCAAGCAACTTTTGAGCCATTTCAACCTCAATTCCCTACAATCAATGATCAATCAAGTTGTTGTACCAGCAACAACAACTATTGGAGCATCGAGGATATCTGGTCGTCTATGCAATTACTCAATGGAGATTAA 618 0.4094 MDKKPCDSSHDPEVRKGPWIMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIIELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAETSQQHGNSSENSNNDHQASNSTSKVSTMAHPNETFSPPSYQATFEPFQPQFPTINDQSSCCTSNNNYWSIEDIWSSMQLLNGD* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0060 205 SMART sant 68 116 IPR001005 -
Gso19g0060 205 SMART sant 15 65 IPR001005 -
Gso19g0060 205 MobiDBLite consensus disorder prediction 119 164 - -
Gso19g0060 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Gso19g0060 205 CDD SANT 73 112 IPR001005 -
Gso19g0060 205 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Gso19g0060 205 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Gso19g0060 205 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 202 - -
Gso19g0060 205 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Gso19g0060 205 Gene3D - 73 147 - -
Gso19g0060 205 Gene3D - 16 68 - -
Gso19g0060 205 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Gso19g0060 205 MobiDBLite consensus disorder prediction 121 164 - -
Gso19g0060 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Gso19g0060 205 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 202 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso19g0060 205 CDD SANT 22 63 IPR001005 -
Gso19g0060 205 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0060 Gso-Chr19 654502 658560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0060 14 205 MYB Transcription Factor Family AT3G01530 60.938 3.69e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g0060 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0060 K09422 - gmx:100816972 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0060 19 654502 658560 Gso19g0060 19 654502 658560 ECH
Gso5g0055 5 535841 539025 Gso19g0060 19 654502 658560 GST