Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0055 ATGGCTGCCACAGCAACTGTGTCTTTGATGGGTCCGAGGTATGCACCACCAGACCCAACACTCCCTAAACCATGGCGGGGTCTTGTGGATGGCAAGACTGGGTATCTTTACTTTTGGAATCCTGAGACTAATGTCACCCAGTATGAGAGGCCATCCTCAAGCTCAGCTTCCCAGTCAAAGTTTTCTTCAGTGCCCAGCTCTTCTGTCCAGGTTCAACAATCATCTCAAGGGTCGCAACGTGGTCGTAGTCCTGATTTCAGTGATAGGTATGATCGAAATGGCACTGGTGGGTCAAATGACGCCGGATCCCGGAACAATCAGAGTTCCAAAGGGGGAAGTTATACTTCTCATGATGTTTCAAATGGAACAAATGTTGCTGGCAATGGTAATTCTTCTGTCAGAGGTCATGGGGCTTCAGATGCTGGAGCTGGACTATCTGCTGAGTCTTATCGACATCGGCATGAAATATCTGTGACTGGAGACAATGTGCCTCCACCGCTTGCATCATTTGGGTCAACTGGCTTTCCATCTGAGCTTCTGAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCTCAGGGAAAACCTTGGGATATTTAATTCCAGCATTTATTCACCTCAAGCGCTCTGGTAATAACTCCAAAATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCCATGAAGTTTGGGAAATCATCTAGAATTTCATGTGCATGTTTGTATGGAGGAGCACCAAAGGGTCCTCAACTGAGAGACATTGATCGTGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTAATCAGGTTTCTTACCTGGTGCTAGATGAGGCAGACAGGATGCTGGATATGGGTTTTGAACCTCAAATTAGGAAAATTGTGAATGAGGTGCCCAATCGCAGGCAAACTCTAATGTTTACTGCAACATGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTAGTCAAGCCTGTCCAGGTGAACATTGGGAATGTAGATGAGCTTGTTGCTAACAAGTCTATTACTCAGCATGTTGAAGTATTGCCACCAATGGAGAAACAAAGACGGCTGGAACATATTTTGCGGTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTGACACGTCATTTCGGAGCTGCTGCTATTCATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAGTCAGTTTCGAACTGGGAGGTCTCCTGTGCTAGTGGCCACAGATGTTGCTGCTCGGGGACTGGATATCAAGGACATTAGGGTGGTTGTCAATTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGAAGAGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCTAAATATGCTTCAGATCTCATCAAAGTCTTGGAAGGTGCAAACCAGAAGGTACCTCCAGAACTTCGTGATATGTCATCACGGAGTGGTGGTGGGATGGGTAGATCCAGACGATGGGGTTCTGGGGGACGAGGTGGACATGGTGATTCTGGATATGGTGGAAGGAATAATGACTCTGGATATGGTGGAAGAGGTAATGATGCAGGATATGGTGGAAGAGGCAGTGATTCTAATTATGGAGGGAGGGGGACTGCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACCATGACTCCCAGAGGAATGATAGGGGTCGGAGCCCAGACAAGGGATCTAGTTGGAGTGATCGCTTCAAAAGCGTCAACCGGGATCGCAGTCGTAGTCCTGACAGGGCTGCACTACCTCAACATTCCCAAGGTGGCAGCTTTCACAAGGCAATGATGGAACGTGGTGGTGGTGGTGGTGGTGATCGCAATAAGAGCTTTAACCGGGACCGAAGCCGCAGTCCTAGCCCTCATAGACAGGAGAAGTGCCCAGCGGTTCGAGATCGTTCCCCAGTTTACAGTTTTCATCAATCAATGATGGGACGAGGTCAGTCATCCCCTTCATCTCAACGGCAGCGTGCACGCAGTCCTCACCGAAACTCACCCCCCTCCCAGGGTGATGGAAGATATGGTGGATCTCATTCATCTTACAATGGAGAAGTGGAGGAAGGGATGATTCCCGAGGAAGAAGGAATGATTGGTCAAGATGATCCCGTAAATGTCAATTAG 2334 0.479 MAATATVSLMGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSSASQSKFSSVPSSSVQVQQSSQGSQRGRSPDFSDRYDRNGTGGSNDAGSRNNQSSKGGSYTSHDVSNGTNVAGNGNSSVRGHGASDAGAGLSAESYRHRHEISVTGDNVPPPLASFGSTGFPSELLREVQNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLIPAFIHLKRSGNNSKMGPTALVLSPTRELATQIQDEAMKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPPMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARNLTRHFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQKVPPELRDMSSRSGGGMGRSRRWGSGGRGGHGDSGYGGRNNDSGYGGRGNDAGYGGRGSDSNYGGRGTAASGRGGGRGFDHDSQRNDRGRSPDKGSSWSDRFKSVNRDRSRSPDRAALPQHSQGGSFHKAMMERGGGGGGDRNKSFNRDRSRSPSPHRQEKCPAVRDRSPVYSFHQSMMGRGQSSPSSQRQRARSPHRNSPPSQGDGRYGGSHSSYNGEVEEGMIPEEEGMIGQDDPVNVN* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0055 777 SMART ww_5 20 53 IPR001202 GO:0005515
Gso19g0055 777 CDD SF2_C_DEAD 387 516 - -
Gso19g0055 777 Pfam Helicase conserved C-terminal domain 399 507 IPR001650 -
Gso19g0055 777 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 319 327 IPR000629 -
Gso19g0055 777 SMART ultradead3 187 390 IPR014001 -
Gso19g0055 777 MobiDBLite consensus disorder prediction 679 701 - -
Gso19g0055 777 Gene3D - 144 377 IPR027417 -
Gso19g0055 777 MobiDBLite consensus disorder prediction 47 145 - -
Gso19g0055 777 MobiDBLite consensus disorder prediction 712 747 - -
Gso19g0055 777 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 124 640 - -
Gso19g0055 777 Gene3D - 17 67 - -
Gso19g0055 777 MobiDBLite consensus disorder prediction 1 27 - -
Gso19g0055 777 SMART helicmild6 427 507 IPR001650 -
Gso19g0055 777 MobiDBLite consensus disorder prediction 92 135 - -
Gso19g0055 777 CDD WW 22 51 IPR001202 GO:0005515
Gso19g0055 777 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 373 IPR014001 -
Gso19g0055 777 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 124 640 - -
Gso19g0055 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 524 IPR027417 -
Gso19g0055 777 MobiDBLite consensus disorder prediction 614 651 - -
Gso19g0055 777 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 546 IPR001650 -
Gso19g0055 777 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Gso19g0055 777 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 168 196 IPR014014 GO:0003724
Gso19g0055 777 Gene3D - 378 549 IPR027417 -
Gso19g0055 777 MobiDBLite consensus disorder prediction 47 83 - -
Gso19g0055 777 Pfam DEAD/DEAH box helicase 192 362 IPR011545 GO:0003676|GO:0005524
Gso19g0055 777 MobiDBLite consensus disorder prediction 538 777 - -
Gso19g0055 777 SUPERFAMILY WW domain 11 52 IPR036020 GO:0005515
Gso19g0055 777 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0055 Gso-Chr19 571329 576509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0055 166 545 Eukaryotic Initiation Factors Gene Family AT3G19760 33.943 1.59e-66 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0055 K12823 - gmx:100816455 1379.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0050 5 467483 472813 Gso19g0055 19 571329 576509 GST