Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0053 ATGTCTCCTTATTCTCTCTCTTTGTTAGCCTCTGTCTCCCCCAAAATGCACACCCTTCTTTCTTTCTCCTCATCACACTCTCCACATCTTCCAAACCACAACATAACCAAATCCAATAATAAACTCTCTCATTCCATCAATGGACTTTCATCCTGCCCTTCTTCTCCTTTGCTCCCCAGTGCCACAAAATCTTCTCCCTTTCTCATTTCCACTTCAAAAATTGCATCTTTCAGGGTCCTTGCTGCTTCCTCTATACCTGATGCTAGAAGTGATGAACCAGCCAAAACTAGTGATTTCTTAAAAACTCTTCAGCTTGGGGCCATGTTTGCAACTTGGTACCTTTTGAACATCTACTACAACATCTACAACAAACAGGTTCTAAAAGTCTATCCATTTCCAGCAACAATTACAGCATTTCAATTTGGCTTTGCATCGTTGGTTATTAATCTAGTCTGGACTTTGAATCTCCATCCCAGACCAAGCATCAGTGGTTCACAGTTTGCAGCAATCCTTCCACTGGCTGTGGCTCACACAATGGGAAACCTCTTGACCAACATTAGTCTTGGCAAGGTTGCTGTATCTTTCACTCACACAATCAAAGCTATGGAGCCTTTCTTCACTGTAGTTCTTTCTGCCCTTTTACTGGGTGAGATGCCTACTTTCTGGGTGGTTTCTTCCCTTGTACCAGTAGTAGGTGGAGTGGCACTGGCATCAATGACTGAAGTCTCTTTCAATTGGATTGGATTCACTACTGCTATGGCATCTAACGTTACTAATCAATCGCGGAACGTTTTGAGCAAAAAACTGATGACTAATGAAGAGGAAACTTTGGACAATATCAATCTCTACTCAGTTATAACTATCATTTCCTTTCTGTTGTTGGTCCCATGTGCTATTCTTGTGGAGGGTGTCAAGTTTTCTCCTTCATACTTGCAATCTGCTGCAAGTCAAGGGCTGAATGTCAGAGAGCTATGTGTCAGATCAGTTCTTGCGGCTTTTTGCTTCCATGCATACCAGCAGGTATCATATATGATATTACAGATGGTGTCACCTGTGACCCACTCTGTTGGAAACTGTGTGAAGCGTGTGGTTGTCATTGTTTCTTCAGTTATATTCTTCCAAATTCCTGTCTCACCCGTTAACACACTTGGAACTGGGCTTGCACTTGTTGGAGTTTTCTTGTACTCAAGGGCAAAGAGGATCAAGTCAGTCCAAAAGACAAATTGA 1227 0.423 MSPYSLSLLASVSPKMHTLLSFSSSHSPHLPNHNITKSNNKLSHSINGLSSCPSSPLLPSATKSSPFLISTSKIASFRVLAASSIPDARSDEPAKTSDFLKTLQLGAMFATWYLLNIYYNIYNKQVLKVYPFPATITAFQFGFASLVINLVWTLNLHPRPSISGSQFAAILPLAVAHTMGNLLTNISLGKVAVSFTHTIKAMEPFFTVVLSALLLGEMPTFWVVSSLVPVVGGVALASMTEVSFNWIGFTTAMASNVTNQSRNVLSKKLMTNEEETLDNINLYSVITIISFLLLVPCAILVEGVKFSPSYLQSAASQGLNVRELCVRSVLAAFCFHAYQQVSYMILQMVSPVTHSVGNCVKRVVVIVSSVIFFQIPVSPVNTLGTGLALVGVFLYSRAKRIKSVQKTN* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0053 408 PANTHER PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 30 402 - -
Gso19g0053 408 PANTHER SOLUTE CARRIER FAMILY 35 30 402 - -
Gso19g0053 408 SUPERFAMILY Multidrug resistance efflux transporter EmrE 145 240 - -
Gso19g0053 408 SUPERFAMILY Multidrug resistance efflux transporter EmrE 321 400 - -
Gso19g0053 408 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 103 403 IPR004696 GO:0016021|GO:0022857|GO:0055085
Gso19g0053 408 Pfam Triose-phosphate Transporter family 103 396 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0053 Gso-Chr19 550800 560207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0053 77 407 Antiporters AT5G33320 64.048 1.71e-146 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0053 K15283 - gmx:100819280 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0053 19 550800 560207 Gso19g0053 19 550800 560207 ECH