Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0051 ATGGCTTCCAAATATCATTATAACAAGTACAACAATCCATCATATGTTGTTGTTATCTTCATAGTGTTGTGTTTCTTCTCCCAGTCAGCACTATCTGATCCAAGAATCTCAGAAGTGGGACACTACTGCAGCACACAGAAATCACAAACAAGTGGTGACTACTTACCCATATTCACCAAAGAAATGGAAAAACTTCTAGAACTTGTGACAAAACAAAACTGGGGGACTCACTCTGAGGGCATGTCATCAACAACAACCACTCCTATCTATGGCTTGGCACAATGCTTCCAAGACCTTTCCAGCATTGATTGCCTTCAATGCTTTGCAGCCAGCCGGACGAAGCTCCCTCGCTGCCTCCCTTCGGTTTCGGCTCGAATTTACCTTGATGGTTGCTTCCTTCGCTATGACAATTACAGTTTCTACACTGAAAACTATGACCCTTTGAGGGACACAGTGAATTGCACCTCAGAGTATGGTTCTGAGGGTGAGAGGTTGGTGTTTGCTGAGAGTGTTGGCAAAGTGGTTGAGAGTGTGGTGAGGGTGGCTGTGAATAATAATGAGGGAAGAGGCTTTTTTGCAGTTGGAGAAGGTGGGGGAGTTTATGCATTGGCACAGTGCTGGAAAACTGTTGGGGTAAAAGGGTGTAGTGATTGCTTGAGGAAAGCTGAAAATGAGGTCAAAGGATGTTTGCCTAAGAGGGAAGGGAGGGCCTTGAATACTGGGTGCTATTTGAGATACTCAACTGTTAAGTTCTACAATCAAGGAGGTCAAGATGGTCAAGGAGATGATTCTTCCAGAAAACGAGTCATTATAGCAGCAGGGTCAGTCTTGGCTGCAGCCGTTGTAGTTCTCACTCTTGCAGTCTCTTATGTGGCCTTCACCAAAAAGAGAAGAAAAAACAATTTTATTGAGGTTCCTCCTTCCTTGAAGAATTCTAGCTTGAATTACAAATATGAAACTCTTGAGAAGGCGACGGATTATTTCAGCTCTTCAAGAAAGATAGGTCAAGGAGGATCTGGTTCTGTATACAAAGGGACTCTGCCAAATGGGAATGATGTTGCTGTTAAGAGATTGGTCTTCAATAATAGGCAATGGGTGGATGATTTCTTCAATGAAGTGAATTTGATTAGTGGAATGCAACACAAGAACCTTGTCAAACTATTGGGTTGCAGCATTGAAGGCCCTGAGAGCCTCATTGTGTATGAGTACCTACCTAACAAGAGCTTAGATCAATTCATTTTTGAAAAGGACATAACAAGGATTCTAAAATGGAAGCAGCGGTTTGAAATAATTCTTGGAACTGCAGAAGGGCTTGCATATCTTCATGGAGGCTCTGAAATAAGAATCATCCATAGAGACATAAAAAGTAGCAATGTTCTTCTGGATGAGAATCTCAGCCCTAAGATTGCAGATTTTGGTCTTGCCCGGTGTTTTGGTACTGATAAAACGCATCTAAGCACTGGCATTGCTGGAACACTAGGTTACATGGCTCCCGAGTATCTGATTCAAGGACAACTTACAGATAAAGCTGATGTCTATAGTTTTGGAGTACTTGTTCTCGAGATTGCAAGTGGCAGGAAGAATAATGTCTTCCGTGAGGATTCTGGTTCCCTTTTGCAAACAGTTTGGAAACTTTACCAATCAAACAGATTGGGTGAAGCTGTTGATCCTGGCTTGGGAGAAGACTTTCCTGCAAGAGAAGCATCAAGGGTGTTTCAAATTGGATTACTATGCACACAAGCTTCTGCTTCCCTGAGGCCATTCATGGCTCAAGTTGCTAGCATGTTAAGTAATTCAAATTTGGATCTCCCTATACCAAAACAACCCCCATTTTTGAACTCTAGATTTCTAGATCAAACATCTCCATTAGGTTTTAGCATAGACAGCTCCTCATCAAACACATTTAAGAAGATTGGTGTGTCCTACAGCCCCTCTGAGTTCTCTAGCACATGCAGCTTAATTAGGCCATCAAGAAGTGAAGAAACAATTATGGAAGCTTGA 2001 0.4228 MASKYHYNKYNNPSYVVVIFIVLCFFSQSALSDPRISEVGHYCSTQKSQTSGDYLPIFTKEMEKLLELVTKQNWGTHSEGMSSTTTTPIYGLAQCFQDLSSIDCLQCFAASRTKLPRCLPSVSARIYLDGCFLRYDNYSFYTENYDPLRDTVNCTSEYGSEGERLVFAESVGKVVESVVRVAVNNNEGRGFFAVGEGGGVYALAQCWKTVGVKGCSDCLRKAENEVKGCLPKREGRALNTGCYLRYSTVKFYNQGGQDGQGDDSSRKRVIIAAGSVLAAAVVVLTLAVSYVAFTKKRRKNNFIEVPPSLKNSSLNYKYETLEKATDYFSSSRKIGQGGSGSVYKGTLPNGNDVAVKRLVFNNRQWVDDFFNEVNLISGMQHKNLVKLLGCSIEGPESLIVYEYLPNKSLDQFIFEKDITRILKWKQRFEIILGTAEGLAYLHGGSEIRIIHRDIKSSNVLLDENLSPKIADFGLARCFGTDKTHLSTGIAGTLGYMAPEYLIQGQLTDKADVYSFGVLVLEIASGRKNNVFREDSGSLLQTVWKLYQSNRLGEAVDPGLGEDFPAREASRVFQIGLLCTQASASLRPFMAQVASMLSNSNLDLPIPKQPPFLNSRFLDQTSPLGFSIDSSSSNTFKKIGVSYSPSEFSSTCSLIRPSRSEETIMEA* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0051 666 Pfam Salt stress response/antifungal 161 248 IPR002902 -
Gso19g0051 666 Pfam Salt stress response/antifungal 55 138 IPR002902 -
Gso19g0051 666 Gene3D - 152 251 IPR038408 -
Gso19g0051 666 Gene3D - 36 140 IPR038408 -
Gso19g0051 666 Gene3D Phosphorylase Kinase; domain 1 288 403 - -
Gso19g0051 666 ProSiteProfiles Gnk2-homologous domain profile. 149 251 IPR002902 -
Gso19g0051 666 ProSiteProfiles Protein kinase domain profile. 328 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0051 666 ProSiteProfiles Gnk2-homologous domain profile. 36 140 IPR002902 -
Gso19g0051 666 Pfam Protein tyrosine and serine/threonine kinase 331 595 IPR001245 GO:0004672|GO:0006468
Gso19g0051 666 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 24 658 - -
Gso19g0051 666 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 24 658 - -
Gso19g0051 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Gso19g0051 666 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Gso19g0051 666 SUPERFAMILY Protein kinase-like (PK-like) 313 619 IPR011009 -
Gso19g0051 666 SMART serkin_6 328 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0051 666 CDD STKc_IRAK 334 596 - -
Gso19g0051 666 Gene3D Transferase(Phosphotransferase) domain 1 404 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0051 Gso-Chr19 526277 530847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0051 13 618 Receptor kinase-like Gene Family AT1G70520 45.600 1.22e-175 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso19g0051 PK_Tyr_Ser-Thr 3.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0051 - - gmx:100817509 1285.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0051 19 526277 530847 Gso19g0051 19 526277 530847 ECH
Gso5g0045 5 424259 428798 Gso19g0051 19 526277 530847 GST