Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0047 ATGGACACTCCAAGCTCCCACTCTCTCTTCACCCACATCGCCTCCAGAGAACTCTTCCGAGTTCCAAAACGACCTCGTATGGACGGATTTGTCTCCGGCTTCAACGAAACTGGCCTCCTCGCCGTACAGCACAATGCCCAACACACCATTCCCCTCTCTCTCTCCTTCTGCAAGACTTCTAAATTTGGACACATTCTCGCTGTGTCCGATGAGGAGGGTTACGTCACCTTGTTTGATACTCGCCGCAAATTCCCTGTTACTTCAAACTTTGAAGAAAACTCAGAGAAAGTGAAGATTTGTGATTGGGTTTCTCACCATAATGCTGTTTTTGATACCTGTTGGAATAAGGAAGATACCCAGATTCTCACTGCTTCTGGTGATCAAACAATAAAATTATGGGATGTTCAAGAACAGAAGTGTCTTGGACTGTTGACTGGGCACACAGGAAGTGTGAAATCTATGTGTTCTCATCCAACTAATTCTGATATTATTGTCTCTGGTTCTAGAGATGGATCCTTTCGTATTTGGGACTTGAGATGCAAGTCCACTGCTAAGAGTAGGTGTGGAGAAGTTAGCATATGTTCAATGGGAGGCGTCAAAGGAGCACATATTTCATCTCAAGCAAGACGAACTAGGAGAGGAAGGGCTGCTTCAATGAGCATTACATCTGTTCTTTGTCTCAAGGACCAGGTTTCTATAGCCACTGCTGGGGCGGTGGATAGTGTGTTGAAGTTTTGGGACACCAGAAATTTGAAAAGTACTGTCACTCAGACTTCTCCTAGTCCTCAGTCAACTGAAAAGCAAACATTACATGGAATATCAAGCTTGTCCCAAGATGAAAGTGGACTTTTTCTTTCAGCCTCTTGCATGGATAATCGAATTTATTTGTATAACACTCTTCAACTTGAAAAAGGGCCTTTAAAATCTTTTTCTGGGTGCCGAATTGAATCATTTTTTGTAAAGTCTGCAATTAGCCCTGATGCATCGAACATAGTCAGTGGTTCTAGTGATGGAAATGCCTATGTTTGGAAGGTTGACAAACCTCTGGAAGATCCTACTATTTTGAAAAGTCATGATGGCGAAGTTACAGCAGTTGACTGGTGTAGCTCTGAAATTGGGAAATTAGCAACTTGTTCTGATGATTTCACAGTTCGTACATGGAATAAAAACAGTTATGTCTCCAGTACACAATGTGCATCTGCCATCCGAAGAAGAGTAATGGCAATTCCTAGTATAGAGTGCAAAATGCTTTTAAACAATGGAAAAAGGTACTCTAAGACAAATGAAGATGCTTTCTTACCATACGATGCACTACACCCAATTACGTCGCCCACTCCAATCACACCACCTAAAATGAATATATCTGAAGGCAACCAACTTTCTTCAGGATTAGATCTAAATGCATCCTCTGAAAAAACTCCAGAATCTGCTTTGAAGAGCCCCTCATCTGTATTGAACCCTCCATCCTCCCTAAAAAGAACTATCCGAGACTACTTTTTAGCATCTTCAAGAACCTTGTAG 1521 0.4195 MDTPSSHSLFTHIASRELFRVPKRPRMDGFVSGFNETGLLAVQHNAQHTIPLSLSFCKTSKFGHILAVSDEEGYVTLFDTRRKFPVTSNFEENSEKVKICDWVSHHNAVFDTCWNKEDTQILTASGDQTIKLWDVQEQKCLGLLTGHTGSVKSMCSHPTNSDIIVSGSRDGSFRIWDLRCKSTAKSRCGEVSICSMGGVKGAHISSQARRTRRGRAASMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSTVTQTSPSPQSTEKQTLHGISSLSQDESGLFLSASCMDNRIYLYNTLQLEKGPLKSFSGCRIESFFVKSAISPDASNIVSGSSDGNAYVWKVDKPLEDPTILKSHDGEVTAVDWCSSEIGKLATCSDDFTVRTWNKNSYVSSTQCASAIRRRVMAIPSIECKMLLNNGKRYSKTNEDAFLPYDALHPITSPTPITPPKMNISEGNQLSSGLDLNASSEKTPESALKSPSSVLNPPSSLKRTIRDYFLASSRTL* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0047 506 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 1 501 - -
Gso19g0047 506 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Gso19g0047 506 Gene3D - 185 420 IPR015943 GO:0005515
Gso19g0047 506 Pfam WD domain, G-beta repeat 139 177 IPR001680 GO:0005515
Gso19g0047 506 Pfam WD domain, G-beta repeat 354 388 IPR001680 GO:0005515
Gso19g0047 506 Pfam WD domain, G-beta repeat 104 134 IPR001680 GO:0005515
Gso19g0047 506 MobiDBLite consensus disorder prediction 444 489 - -
Gso19g0047 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 143 IPR001680 GO:0005515
Gso19g0047 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 388 IPR001680 GO:0005515
Gso19g0047 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Gso19g0047 506 PANTHER BNAA06G31940D PROTEIN 1 501 - -
Gso19g0047 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 186 IPR001680 GO:0005515
Gso19g0047 506 SUPERFAMILY WD40 repeat-like 55 392 IPR036322 GO:0005515
Gso19g0047 506 SMART WD40_4 43 79 IPR001680 GO:0005515
Gso19g0047 506 SMART WD40_4 263 298 IPR001680 GO:0005515
Gso19g0047 506 SMART WD40_4 137 177 IPR001680 GO:0005515
Gso19g0047 506 SMART WD40_4 95 134 IPR001680 GO:0005515
Gso19g0047 506 SMART WD40_4 207 247 IPR001680 GO:0005515
Gso19g0047 506 SMART WD40_4 348 388 IPR001680 GO:0005515
Gso19g0047 506 SMART WD40_4 303 344 IPR001680 GO:0005515
Gso19g0047 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 136 - -
Gso19g0047 506 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Gso19g0047 506 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Gso19g0047 506 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Gso19g0047 506 Gene3D - 27 184 IPR015943 GO:0005515
Gso19g0047 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 346 IPR001680 GO:0005515
Gso19g0047 506 MobiDBLite consensus disorder prediction 448 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0047 Gso-Chr19 484457 488399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0047 99 181 Miscellaneous Gene Families AT5G08390 31.325 2.76e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0047 K11790 - gmx:100819114 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0040 5 381924 386042 Gso19g0047 19 484457 488399 GST