Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0033 ATGGAGTCACCCGGTAACGAGCATGTGGTGGGTGGCGCAGAACCCAACGACGTCGTTACGCCCTTTTCCCACAGAGAAGAACCTCACAATTCCCAACCCCTCACCGGCGACGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTATCAAGCACTTTGGTAAGTATGGTGAGATCACGGATTCAGTTATCATGAAGGACAGGAAAACTGGGCAGCCTCGTGGATTCGGGTTTATAACATATGCGGATCCCTCTGTGGTCGATAAAGTCATTGAGGAACCTCATGTCATCAATGGCAAACAAGTTGAGATTAAGCGGACGATACCGAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACACGCTACGGCGAAGTTAAAGATCACCAAATAATGCGGGACCACTCCACCAACCGATCTCGTGGCTTTGGGTTTATCACATTTGAATCTGAAGAAGCAGTTGATGATCTTCTGTCCATGGGGAACAAAATTGACTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACTCAGCACCTCCATCATCCAAGCGCTATAACGACTCTAGGTCTTCATACAGCAGTGGTGGATATGGAGATGCTTATGATGGATTTGGTGGCAGCTTTGGAATGGGGGGTGGTTATAGGTCAGGTGGTGCTTATGGTGGTGGTAGGGGTAGTGGTGCTTATGGTGGCTATGCAAGTGAATTTGGTGGGTATGGAGGATATGCTGGTGCGATGGGGCCGTATAGAGGAGATCCCTCCCTTGGGTATGCTGGTCGTTATGGAGGAAGCTTTAGCAGAGGGTATGATCTTGGTGGGTATGGCGGACCTAGTGAGAATTATGGAGCATATGGGGCAGGTGGGGGTTCTTCGGGTGGTGCTGGTGCTGGTGCCGGTGCCGGTGCCTACCAAAGTGGCTATGATGGAAACCTGGGAGGGGGATATGGAGGGGCTAGTGGAGGCCCCTTCTATGGGAGCACTAGAGGAGGATACAGCGCTGGTCGATATCATCCTTATGGAAGATAA 1134 0.4938 MESPGNEHVVGGAEPNDVVTPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEEPHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFESEEAVDDLLSMGNKIDFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYSSGGYGDAYDGFGGSFGMGGGYRSGGAYGGGRGSGAYGGYASEFGGYGGYAGAMGPYRGDPSLGYAGRYGGSFSRGYDLGGYGGPSENYGAYGAGGGSSGGAGAGAGAGAYQSGYDGNLGGGYGGASGGPFYGSTRGGYSAGRYHPYGR* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0033 377 MobiDBLite consensus disorder prediction 1 40 - -
Gso19g0033 377 Gene3D - 42 121 IPR012677 -
Gso19g0033 377 SUPERFAMILY RNA-binding domain, RBD 128 234 IPR035979 GO:0003676
Gso19g0033 377 SMART rrm1_1 131 204 IPR000504 GO:0003723
Gso19g0033 377 SMART rrm1_1 43 114 IPR000504 GO:0003723
Gso19g0033 377 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 377 - -
Gso19g0033 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 102 IPR000504 GO:0003723
Gso19g0033 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 199 IPR000504 GO:0003723
Gso19g0033 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Gso19g0033 377 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 377 - -
Gso19g0033 377 MobiDBLite consensus disorder prediction 204 226 - -
Gso19g0033 377 Gene3D - 124 236 IPR012677 -
Gso19g0033 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Gso19g0033 377 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0033 Gso-Chr19 303550 307344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0033 38 194 Eukaryotic Initiation Factors Gene Family AT1G71770 25.568 9.64e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0033 K12741 K14314 gmx:100793209 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0033 19 303550 307344 Gso19g0033 19 303550 307344 ECH