Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0023 ATGGCTAGGAGCTGGCTTATTGACATTAGAGGATTTGCAAAGAAAGTGAAAGATACTACTCTGTCAACAGATGATCAAATGAAGGACTGTGGAACATACAGCGAATGCCCGAAATGTCATTATCATATTGATAACAGTAATGTTTCTCATGAGTGGCCTGGCTTTCCTGTTGGTGTAAAGTTTGATCCTTCTGATGTTGAGCTTTTAGAGCATTTAGCAGCAAAGTGCTGTATTGGAAACAGAGAGCCACACATGTTTATTCATCAGTTCATCCCAACTCTAGAAGGAGAGCAAGGTATTTGCTACACTCATCCACAAAATCTTCCAGGTGCTAAGACGGATGGGAGTAGTGTCCATTTCTTTCACAAAACAGCTAATGCATATGCTACTGGACGAAGGAAGCGTCGAAAGATTCATCATCAAGATGGTTTGACTGAGGAGCATGTACGCTGGCACAAGACTGGTAGGACCAAAGCTGTGACAGAAGATGGAGTGCATAAGGGTTTTAAGAAGATCATGGTTCTTTATATAAGATCTAAGAAAGGGACCAAGCCATATAAAACCAATTGGGTGATGCATCAGTACCATCTAGGGAGTGAAGTTGAGAAGGATGGTGAATATGTGGTTTCAAAAATATTTTATCAACAGCATAAGCAGAATGAGAAGAATGAGGAGAATACAATGGTTGAAGATTCTAACGTAGCAGCACAAGCAGGTCCAAGAACCCCAAAACCAAATCCCCCTACTCGACCTTGTACAGCCAAATGTGATGACAATTTTGATGAAAATGAACTTCTGCCATTCATCCAGGATGCCAGGCCTATACCTGGAGAATCACATGCACCACCATCTAATGTTCAAGATGAGGACCCTGCATGGTTGGCTGGTGAATCACAAGCTGACTGTGACTTCGATGGCTTGGAAGACATATTATTATGCAAGGAGATGTTACAATCATCTGCTCTCCTAAATCATTCTGGATTGACCTCCACTTTTAATGGCGATGCAAAGGCGAACAAGTTGGTTGCACCTGGAAACAATAATGATTATGGATCTCATGGAGTTTCTGTCCTGGACACACTGGAATTGGATACTCCTCCAGACTTTGATCTTTCTAATTTACAATTTGGTTCTCAAGACAGCACCCTTCAGTGGATTGACACACCATAA 1170 0.4171 MARSWLIDIRGFAKKVKDTTLSTDDQMKDCGTYSECPKCHYHIDNSNVSHEWPGFPVGVKFDPSDVELLEHLAAKCCIGNREPHMFIHQFIPTLEGEQGICYTHPQNLPGAKTDGSSVHFFHKTANAYATGRRKRRKIHHQDGLTEEHVRWHKTGRTKAVTEDGVHKGFKKIMVLYIRSKKGTKPYKTNWVMHQYHLGSEVEKDGEYVVSKIFYQQHKQNEKNEENTMVEDSNVAAQAGPRTPKPNPPTRPCTAKCDDNFDENELLPFIQDARPIPGESHAPPSNVQDEDPAWLAGESQADCDFDGLEDILLCKEMLQSSALLNHSGLTSTFNGDAKANKLVAPGNNNDYGSHGVSVLDTLELDTPPDFDLSNLQFGSQDSTLQWIDTP* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0023 389 ProSiteProfiles NAC domain profile. 55 215 IPR003441 GO:0003677|GO:0006355
Gso19g0023 389 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
Gso19g0023 389 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 387 - -
Gso19g0023 389 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 387 IPR044799 GO:0003700
Gso19g0023 389 SUPERFAMILY NAC domain 39 215 IPR036093 GO:0003677|GO:0006355
Gso19g0023 389 Gene3D NAC domain 64 220 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0023 Gso-Chr19 195078 199844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0023 36 215 NAC Transcription Factor Family AT1G28470 55.376 8.37e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso19g0023 NAM 1.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0023 - - gmx:100782779 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0023 19 195078 199844 Gso19g0023 19 195078 199844 ECH