Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0012 ATGGCCTTGCAGAACATTGGTGCTGGAAATAGTGATGATGCCTTCTATCGGTATAAGATGCCTAAAATGATTACCAAGATCGAGGGTAGAGGAAATGGCATCAAAACAAATATTGTCAACATGGTTGACATTGCCAAGGCATTGGCAAGGCCACCCTCTTACACAACCAAGTACTTTGGTTGTGAACTTGGGGCCCAGTCTAAGTTTGATGAGAAAGTTGGGACTTCTCATGTTAATGGGGCACATGACACCCCAAAACTTGCTGGTCTTCTTGAGATCTTTATCAAGAAATATGTCCAGTGTTATGGTTGTGGAAACCCTGAAACTGAGATATTGATTACTAAGAACCAAATGATCCAGCTGAAATGCGCTGCTTGTGGTTTTGTGTCAGATGTGGATATGAGAGACAAGCTGACTAGCTTTATTATAAAAAACCCTCCTGAAACAAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGAGCCGAGAAGGAGAGACTGAAGGAAGGTGCAGCAGCTGATGAGGAACAAAAGAAAATGAAGAAAGAGACTAAGAAGAAAAGCTTATCTTCCACTTCCAAGGATGAGACCACAAAGTCAAACTCTACAAAGAAGAAAGCCAGTGGCTCTGATGAAGATTGTCGATCTCCAGATCACAGTCAAGTTGATGATGAGAAAGAAGAGGCACCTGATGAAGATGATGATGGTGAAGTACAATGGCTAACAGATACGTCATTAGAGGCTGCTCGGCAACGTATCCAAGAGCAGCTAAGTGCCGTAACAGCTGATATGGTCATGCTCTCCACAGATGAGCCAGAGAAGAAGGAAACAGCATCAAGTAAGAAAAGTGATGGTTCTGAAAATGGTAACACGATGCACTACAAGAAACTGGTTGGAGAAGTGAAAGCAATCTTGAACAAAGGTGTTGTGGCAAGTGAATTGCAGTCCCAAATGGAAGCAATTCCATCACCAGCTCAAGAAAAGATCAGTGCTCTGATTGAGGCCTTATTTGAGGGCATTGAGAAAGGGTTTGCAAAAGAGGTGGTCAAGAAGAAGCGCTACTTTGATGCTGCAGTTTCCATGGGGGAGGGATCACATTTGCTATTGCTTCGTGCAATTGAGGCTTTCTGTCTAAAGTCCACTTCCAATGCTTTGAAGGAAATTGCCATTGTTTTGAAGGCACTGTATGATGCTGATCTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAAGAAGGGCTTAAGGGTGACAACAAGCACTCTCAGATATGGAAGAATACCAAACCTTTGATTGAATGGCTTCAAAGTGCAGAATCAGAAACAGAGGAAGAATAA 1335 0.4292 MALQNIGAGNSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPPSYTTKYFGCELGAQSKFDEKVGTSHVNGAHDTPKLAGLLEIFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTSFIIKNPPETKKGSKDKKAMRRAEKERLKEGAAADEEQKKMKKETKKKSLSSTSKDETTKSNSTKKKASGSDEDCRSPDHSQVDDEKEEAPDEDDDGEVQWLTDTSLEAARQRIQEQLSAVTADMVMLSTDEPEKKETASSKKSDGSENGNTMHYKKLVGEVKAILNKGVVASELQSQMEAIPSPAQEKISALIEALFEGIEKGFAKEVVKKKRYFDAAVSMGEGSHLLLLRAIEAFCLKSTSNALKEIAIVLKALYDADLLEEEHIVQWYQEGLKGDNKHSQIWKNTKPLIEWLQSAESETEEE* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0012 444 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Gso19g0012 444 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Gso19g0012 444 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Gso19g0012 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 1 444 - -
Gso19g0012 444 CDD W2_eIF5 327 442 - -
Gso19g0012 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 444 IPR045196 GO:0003743|GO:0006413
Gso19g0012 444 SMART 542_3 352 440 IPR003307 GO:0005515
Gso19g0012 444 Pfam eIF4-gamma/eIF5/eIF2-epsilon 367 444 IPR003307 GO:0005515
Gso19g0012 444 Gene3D - 105 145 - -
Gso19g0012 444 SUPERFAMILY ARM repeat 295 438 IPR016024 -
Gso19g0012 444 MobiDBLite consensus disorder prediction 143 238 - -
Gso19g0012 444 MobiDBLite consensus disorder prediction 148 224 - -
Gso19g0012 444 Gene3D - 287 435 - -
Gso19g0012 444 MobiDBLite consensus disorder prediction 269 291 - -
Gso19g0012 444 ProSiteProfiles W2 domain profile. 287 444 IPR003307 GO:0005515
Gso19g0012 444 Gene3D - 3 104 - -
Gso19g0012 444 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0012 Gso-Chr19 100418 102641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0012 1 437 Eukaryotic Initiation Factors Gene Family AT1G77840 61.659 3.50e-177 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0012 K03262 - gmx:100792481 811.601