Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2488 ATGGAGAAGGTGAGTTTTGTGAAGAATGGAGAGCTTAGATTGCCTCCGGGGTTTCGTTTCCACCCGACTGATGAGGAGCTGGTTTTGCAGTACTTGAAGCGCAAGGTCTTCTCCTGCCCTCTGCCAGCCTCTATCATTCCTGAGGTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAGATACTTCTTTAGCACCAAAGAGGCCAAATATCCCAACGGAAATCGCTCTAACAGAGCCACAAATTCGGGTTATTGGAAGGCAACTGGCTTGGACAAACAAATTGTTACTTCAAAAGGGAACCAAGTTGTGGGGATGAAGAAGACACTTGTTTTCTACAGAGGCAAGCCTCCTCATGGATCCAGAACTGATTGGATCATGCATGAGTATCGCCTCAACATCCTTAACGCCTCTCAGAGCCATGTTCCCATGGAAAATTGGGTTCTATGTCGCATATTTTTGAAGAAGAGAAGCGGTGCTAAAAATGGGGAGGAGAGCAACAAGGTGAGGAACTCTAAGGTGGTTTTCTATGACTTCCTAGCGCAGAACAAGACTGATTCCTCATCCTCGGCCGCCAGTGGAATTACACATGAACATGAATCAGATGAACATGACCATGAAGAGAGCAGTAGCTCCAACACCTTCCCTTATACTATTAGAACGAAACCTTAA 690 0.4594 MEKVSFVKNGELRLPPGFRFHPTDEELVLQYLKRKVFSCPLPASIIPEVDVCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLNILNASQSHVPMENWVLCRIFLKKRSGAKNGEESNKVRNSKVVFYDFLAQNKTDSSSSAASGITHEHESDEHDHEESSSSNTFPYTIRTKP* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2488 229 MobiDBLite consensus disorder prediction 190 229 - -
Gso18g2488 229 Gene3D NAC domain 23 167 IPR036093 GO:0003677|GO:0006355
Gso18g2488 229 MobiDBLite consensus disorder prediction 202 216 - -
Gso18g2488 229 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 227 - -
Gso18g2488 229 SUPERFAMILY NAC domain 9 161 IPR036093 GO:0003677|GO:0006355
Gso18g2488 229 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 1 227 - -
Gso18g2488 229 ProSiteProfiles NAC domain profile. 14 161 IPR003441 GO:0003677|GO:0006355
Gso18g2488 229 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2488 Gso-Chr18 57643085 57644850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2488 1 221 NAC Transcription Factor Family AT5G13180 60.236 4.42e-102 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso18g2488 NAM 3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2488 - - gmx:100170709 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2488 18 57643085 57644850 Gso8g2979 8 47482255 47483704 GST