Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2478 ATGGCTTCATCTTTAGAGGAGCTTCTTGCAAAGGAGGGGTTCAAAGGAATCAGAAGAGTGACAAGGTCTAGATCCTCCTTCCACTATGGTGCTTCAAGTGAGCCTCTTCACTCTTTGGATGGGAGATTTTCTGTATCAAGTGAAAGAATTCGAACTCAGAGAACAAAGTCTGATGCCTCACGATATCAGATTTCAAGTGGACAGTTAAAAACTGACAACGATACTGCTATGAACCGGAGGTCAAGGGATAATCTTTTTTTGAGAGACAAAATGGATCAACGGTTGAAGAACTCTTCTATCGATACAGATTCAGGCAGAGGAGTTGATACCAATTCATCAGAATACATGCCAAGGAATGAGATTACTGAGGTGACTGAGCAAGAAGCTAACATAGTCAAAGATAATTGTTCAACAGAAGTTTCTTCAAAAAGAGGCAAAGAGAAGAATTTCAATGAACTTGTGGAGGAGGAAAATCCTGTCAAGGATGCAAAGGCGCGCAGCAGAAGTTCCAGTATACATATGCTTGGACACTCTAGTGAAACTAGAAACAATATAAAACCCCAGAAGGACTCATACACTAGATCAAATAGCAGCAGGAATAAAGATAGCAATCATGCTATTCAAGCTGCTTCTAGTCTTGCTCTTGATGAAGTTGCTGTCCAAGCAGTAGTTTCAATTCTAAATGGCTATATAAAGAGTTTTCCAAAAGATGCGGATTTCCGGTCAACATTGCGTCACAAATGTTTCTCCTCCTTGAATTTTATTGAACTGGAAGAAGAGAACATTACGGGGACCAAAGTCATAAGAAGTCTTGAGCAAGCAATCGAGGCCATTGAACAAACTGCTGAGGAGCCTATATCTACCATGTATCTGAAAAGAACCATGATGCAGCTTAGCATTATTACAGGTTTGAGTTTAAATGATTTGAAGTACGAGTGTACGTGTGGGATTCCAAATTTTAAGTTGTCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATACATGATGCAGAAAAAAAATAAGGTGTCTGCGAAGCATCTCTTGCAAGTGTTTTGTGATTCACCTTTTCAGGCACGGACAGTATTGTTGCCTGAACTGTGGGAGCATCTATTTTCTTCACAATTTTCTCATTTGAAGGCATGGTACAGCAAGCAGGCAGAATTTCTAGTAGATGCACCAAGCAAAACAAGAAAGCTAAAACTTCTTCAAAAAGTGTATAATGAACATTTGGATTCTGGAACTCATATATTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAGTAGAATCTCCGCCTACTCCTTTAATTGGCATTCCATCAGCTTCTGTAATGGGCAGTCAAGAGGGAAGTTCACTTGGTTATTCTTTTGAGTCTGCTAGCTCCATTGACCCACTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTAGCTTGAGCAAACCCAGAGTTTACCAAGTCAAAGATATTAAGGATGATGATAACATAGACAACTGCATGAAAGACTCTTATGGTTCAACTATTGTTAGACAGACATTAACATATGAGTCTGAAACTGTTAAATTTACAGATCAAGATATTGAAAATTTCTCTCAAGGTGTAGCAATTGATACAATCAAGCCTCAGAAAGGAAATTCAATGACAGCTTCAGAAGAATGGCAGAAAAGGAATCTCAGCAATGACATTAATAACTCTTTCTCTATGGAAACTAATTTAAACAGCCACAGTATTGATGCTCTATCACATGAAAAAGCGAGTGAACCTGTTCTTATAAAGCCAAATAAGACATGTTCTTCTCTTGAAGGACCATATTTTCCAAGTATTCCTCATGAATTTATTTGTCCTCTTACTGGAAATCTCTTTGAGGAACCAGTCACCCTAGAGACTGGTCAGACCTTTGAAAGAGAAGCCATCAAAGCATGGTTTGAAAAGGGAAATAGAACATGCCCAGTAACAGGAAATACTTTGGAATGTGTGACCATGCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATACTTGGAAGTCAGAACTTTTTGATTACCTTATTGATCTTCCTTCTCAAACAGTGGAGAATCCGGAGGAGCTTAAGTTGAAAAAGAGGGATGAGGCTGCTGTTTTCAAGTTAGCGAGTCTTTTCTCCTCTTTGAAAGAAGAGGACAAATCAACTTATGCTAAGCATCTGATCTCTTTAGGATTTCTTCCATTTCTTTTTAGGAGGTTTGAACAGGGAAATGTGGAAGAAAAATCACATGTGATGTCACTCTTGCTAAACTGTATTCAAGTGGACTCTGGTTGCATATATCAGATAGCAACGAGTGTTAACAGAAAATGTCTTCTTGAGCTTCTTCACAGTAAGAAGGCTACCCCGACAACAAATGCAATACTATTCCTTACTGAAATTTTATCAATGAAGAGGAGAAAGGATGTTACCTCATTCATAAGTGGCTTGGCGGGTGAAAAAGTATTTAATATAATGCATATTCTGCTCATGTATCTCAAGAAATCTTCTCCATTTGAAAAGCCCCTAATCGCTGTCCTTCTGTTACACTTTGATCTGCTGGTTGAGCCTCAAAAGTTTAGCATATACAGAGAGGTGGCTGTGAATGCTATTGCAGAGGCACTTGATGCCAGCTTAAATGATGAGAAGGGCAGAGAAAAGTGTTGCAGAGCACTAGTAATCTTGTGTAGCCATTTTTCTTCTACTGGAAAGATACCAACCAAGACTAGCATCTTAAAACAAGCAGGTTATAATAATGATAGCTTAGAAGTTAAACCTCCTGGCCATGAAGAAGAGGGTCAACGGTTATATGTAGCCATTTCATCGGAAGGTGAAGAAAAAAGGGGTGAAGAGTTGCTAAAGAAGTTGTTAGAGTCATTGATTGGTGATGGAGAAAGCCCGTTTTTGAAGAACATATCTAGATGTTTAGATTCTAAGCACTTAGATTTGGTGAGAGCGTGTCTAATAACTGTGACATGGTTGAGCTCCTCACTGTCTATGCTATTTAGTGCTGGATTGCATCTTCCCGCCTTCTTATCCATCATCTCTCAGTTGAAAGGAATCCTGGAAAATGGAGAACTTGAGCTCAAGACTCTTGCTTCTCTGTCTTTGCTTAATTTCAGTAAAATATCAGAGTGCAAAACGCTTTTGAAGACTATGGCAGAAGATATTGGTCCCCTTCTTCATGAACTTGATGATGTAACATGGACTGCAAAACAGCTGCATGCCATTGTGTCGAGGGAGAATCTGTAG 3270 0.3924 MASSLEELLAKEGFKGIRRVTRSRSSFHYGASSEPLHSLDGRFSVSSERIRTQRTKSDASRYQISSGQLKTDNDTAMNRRSRDNLFLRDKMDQRLKNSSIDTDSGRGVDTNSSEYMPRNEITEVTEQEANIVKDNCSTEVSSKRGKEKNFNELVEEENPVKDAKARSRSSSIHMLGHSSETRNNIKPQKDSYTRSNSSRNKDSNHAIQAASSLALDEVAVQAVVSILNGYIKSFPKDADFRSTLRHKCFSSLNFIELEEENITGTKVIRSLEQAIEAIEQTAEEPISTMYLKRTMMQLSIITGLSLNDLKYECTCGIPNFKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFCDSPFQARTVLLPELWEHLFSSQFSHLKAWYSKQAEFLVDAPSKTRKLKLLQKVYNEHLDSGTHIFAVYYKDWLTEGVESPPTPLIGIPSASVMGSQEGSSLGYSFESASSIDPLSPQPMVSKKLYDSMFGSLSKPRVYQVKDIKDDDNIDNCMKDSYGSTIVRQTLTYESETVKFTDQDIENFSQGVAIDTIKPQKGNSMTASEEWQKRNLSNDINNSFSMETNLNSHSIDALSHEKASEPVLIKPNKTCSSLEGPYFPSIPHEFICPLTGNLFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGNTLECVTMPFTNLILKRLIDTWKSELFDYLIDLPSQTVENPEELKLKKRDEAAVFKLASLFSSLKEEDKSTYAKHLISLGFLPFLFRRFEQGNVEEKSHVMSLLLNCIQVDSGCIYQIATSVNRKCLLELLHSKKATPTTNAILFLTEILSMKRRKDVTSFISGLAGEKVFNIMHILLMYLKKSSPFEKPLIAVLLLHFDLLVEPQKFSIYREVAVNAIAEALDASLNDEKGREKCCRALVILCSHFSSTGKIPTKTSILKQAGYNNDSLEVKPPGHEEEGQRLYVAISSEGEEKRGEELLKKLLESLIGDGESPFLKNISRCLDSKHLDLVRACLITVTWLSSSLSMLFSAGLHLPAFLSIISQLKGILENGELELKTLASLSLLNFSKISECKTLLKTMAEDIGPLLHELDDVTWTAKQLHAIVSRENL* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2478 1089 PANTHER OS04G0584500 PROTEIN 1 1087 - -
Gso18g2478 1089 ProSiteProfiles Zinc finger SWIM-type profile. 298 336 IPR007527 GO:0008270
Gso18g2478 1089 MobiDBLite consensus disorder prediction 136 204 - -
Gso18g2478 1089 MobiDBLite consensus disorder prediction 171 204 - -
Gso18g2478 1089 MobiDBLite consensus disorder prediction 47 78 - -
Gso18g2478 1089 Pfam U-box domain 613 682 IPR003613 GO:0004842|GO:0016567
Gso18g2478 1089 ProSiteProfiles U-box domain profile. 612 687 IPR003613 GO:0004842|GO:0016567
Gso18g2478 1089 MobiDBLite consensus disorder prediction 57 74 - -
Gso18g2478 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 686 IPR013083 -
Gso18g2478 1089 SUPERFAMILY RING/U-box 607 683 - -
Gso18g2478 1089 SUPERFAMILY ARM repeat 710 1055 IPR016024 -
Gso18g2478 1089 PANTHER OS04G0584500 PROTEIN 1 1087 - -
Gso18g2478 1089 Gene3D - 702 1077 IPR011989 -
Gso18g2478 1089 CDD RING-Ubox_PUB 617 658 IPR045210 -
Gso18g2478 1089 MobiDBLite consensus disorder prediction 139 168 - -
Gso18g2478 1089 SMART Ubox_2 616 680 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2478 Gso-Chr18 57519970 57527692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2478 613 680 U-box Gene Family AT5G42340 44.118 5.87e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2478 - - gmx:100820501 2085.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2478 18 57519970 57527692 Gso8g2990 8 47561628 47568897 GST