Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2476 ATGCCGGAGCTTCGTAGTGGACCGCGACGACGTCGTGCTCCGGTTGCTCGTAAAAGCTCCGAACCACCGTCTCCGGCCGGGAGATACGTCAAGACTCGCGCTGCAGTTGCCAGAGAGGCAGCGGCGGTGGAGAGGCCAAGAACTCGTTTGGCGGCCAAAAAAGAGGAGAATCCCCTTATAATAATATCCGATCACACTAAGAAAGACGACGCTGCCGCCATGGCCGACGAGAGTGGTGGCTTGAGTGCAAACAAGGGCGTTGCTCAAGAAGATGACACCAACGCAGCTCCTTTTCCGGAGAGGGTTCAAGTAGGAGGATCACCTGTCTACAAAGTAGAGAGGAAACTGGGCAAAGGTGGCTTTGGACAGGTTTTTGTTGGCCGTCGAGTCACTGGTGGTAACGATCGGACCACTGGTGCTGGTGCCACTGAGGTGGCATTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAATTATGGCCCTCCTTACGAGTGGCAAGTATACAACACCCTTGGTGGCAGCCATGGAATACCTAAAGTACACTACAAAGGAAGACAAGGGGAATATTATGTGATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTTTGGAATTCCTCAAGCCAGGCTATGACTGCGGAAATGGTTGCATGTATAGCAGTCGAGTCCCTATCGATCCTGGAGAAGATGCATGCAAGAGGCTATGTGCATGGAGATGTAAAACCAGAAAACTTTTTACTAGGTCAACCTTCTACACCACAAGAAAAGAAATTATTTCTTGTAGACCTTGGGTTAGCAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATCTTCCTTCATAAAGGCAGGTTACCTTGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGCTATGCTGTTTTTGCCCTGCTCCTTTTAGGCAGTTCCTTGAGATTGTAGTAAACATGAAGTTTGATGAAGAACCTAACTATTCCAGGCTAATATCTTTGTTTGATGGTATGCTTGGACCGAATCCTGCATTGAGGCCAATTAACACTGAAGGTGCTCAAAAGGTTGGGCAGAAGAGGGGTAGATTGAATATTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGCAAGATTAGCGCAACATGTGGAGAGAGGGATTGCAGATGGCCTTCTAATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCCCTTATTATGGATGCTGGAACTGGCTTTTCAAGTCAAGTTTATAAGTTGTCACCATTTTTCTTACACAAGGAATGGATCATGGAACAGTGGGAAAAGAACTATTACATTACTTCTATTGCAGGGGCTAATAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACACAACAATCATACAAAGTAAGTGACTCATTCCCATTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCGCGAAATGCCGGATTCAGTGATCAGGTTGTTGAACTTGATTTTCTCTATCCTAGTGAGGGAATCCACAGGCGATGGGATAATGGTTATAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATACTGAGCATTCCTAGGCGCAGGCCCGGAGATGAAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAGTATGCTGA 2019 0.4586 MPELRSGPRRRRAPVARKSSEPPSPAGRYVKTRAAVAREAAAVERPRTRLAAKKEENPLIIISDHTKKDDAAAMADESGGLSANKGVAQEDDTNAAPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRTTGAGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMTAEMVACIAVESLSILEKMHARGYVHGDVKPENFLLGQPSTPQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEIVVNMKFDEEPNYSRLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFSSQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2476 672 ProSitePatterns Protein kinases ATP-binding region signature. 116 148 IPR017441 GO:0005524
Gso18g2476 672 SMART serkin_6 110 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2476 672 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 68 643 - -
Gso18g2476 672 MobiDBLite consensus disorder prediction 1 33 - -
Gso18g2476 672 PANTHER CASEIN KINASE-RELATED 68 643 - -
Gso18g2476 672 Gene3D Transferase(Phosphotransferase) domain 1 80 429 - -
Gso18g2476 672 Pfam Protein kinase domain 110 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2476 672 CDD STKc_CK1 110 385 - -
Gso18g2476 672 SUPERFAMILY Protein kinase-like (PK-like) 110 393 IPR011009 -
Gso18g2476 672 ProSiteProfiles Protein kinase domain profile. 110 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2476 672 MobiDBLite consensus disorder prediction 1 17 - -
Gso18g2476 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2476 Gso-Chr18 57477904 57485396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2476 97 267 EF-hand Containing Proteins AT4G36070 27.322 1.51e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Gso18g2476 Pkinase 8.6e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2476 - - gmx:100819969 1355.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2476 18 57477904 57485396 Gso8g2992 8 47602951 47610014 GST